Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Reverse (-)

17523071 .. 17526126

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTCCTGGTGGCAGTGCATTGAAAGAAGCTCTAGAATCTAACTCGACAGGCGTAGATTATGAGGTTAAGATGGCAAAGGTTGAGGCTAATAGCAAACCAACAAAATCAGGTAGTGGCTCCATTGGAAAATTCCATTCGAGCAATGGTGTTTATGAGCTCCTTGAATGTCCGGTTTGTACAAATTTAATGTATCCTCCAATTCATCAGTGCCCGAACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACATGCCGCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCGGAATCATTGGAAGTTCCATGCCGGTACCAAAATTTAGGGTGTCAGGACATTTTCCCATACTACAGCAAGCTCAAGCACGAGCAGCATTGCAGGTTTCGATCCTACAGCTGTCCTTATGCTGGTTCTGAGTGTTCAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGTTGACATGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCATGAGGTCGAGAATGCTACATGGATGCTTACGGTCTTCAACTGTTTCGGAAGACAGTTCTGCTTACACTTTGAGGCGTTTCAGCTCGGGATGGCACCAGTGTACATGGCGTTTCTAAGGTTTATGGGAGACGAGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGTCGTAAACTAACATGGCAAGGGATCCCAAGAAGCATCAGAGACAGTCACAGGAAAGTCCGAGATAGTCAAGACGGACTCATAATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAGTGACAAAGAAGAGCTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0043170 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902115 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

305

Amino Acids

34.56

Weight (kDa)

7.85

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	57 - 92	3.8e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	106 - 181	1.7e-30	Sina, zinc finger
Sina_TRAF	PF03145	201 - 298	6.2e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	348
AccB1I	GGYRCC	2 cut(s)	348, 658
AciI	CCGC	3 cut(s)	277, 323, 563
AclWI	GGATC	3 cut(s)	417, 763, 776
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	131, 184, 355
AdeI	CACNNNGTG	1 cut(s)	231
AfaI	GTAC	4 cut(s)	181, 350, 668, 851
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	25, 167, 237, 538, 604
AjnI	CCWGG	1 cut(s)	7
Alw21I	GWGCWC	4 cut(s)	162, 533, 742, 879
Alw26I	GTCTC	2 cut(s)	687, 780
Alw44I	GTGCAC	1 cut(s)	529
AlwI	GGATC	3 cut(s)	417, 763, 776
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	529
ApeKI	GCWGC	2 cut(s)	240, 406
ApoI	RAATTY	3 cut(s)	131, 184, 355
Asp718I	GGTACC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	650
BaeGI	GKGCMC	2 cut(s)	215, 533
BamHI	GGATCC	1 cut(s)	768
BanI	GGYRCC	2 cut(s)	348, 658
BanII	GRGCYC	3 cut(s)	162, 742, 879
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
BauI	CACGAG	1 cut(s)	401
BbsI	GAAGAC	2 cut(s)	592, 622
Bbv12I	GWGCWC	4 cut(s)	162, 533, 742, 879
BbvI	GCAGC	2 cut(s)	227, 418
BccI	CCATC	5 cut(s)	67, 498, 518, 549, 649
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	204
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	687, 780
BfaI	CTAG	2 cut(s)	35, 834
BfmI	CTRYAG	2 cut(s)	385, 427
BfuAI	ACCTGC	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	204
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	3 cut(s)	241, 277, 407
BlsI	GCNGC	3 cut(s)	242, 278, 408
Bme1390I	CCNGG	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	650
BmiI	GGNNCC	5 cut(s)	6, 121, 350, 660, 770
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	3 cut(s)	290, 579, 789
BpiI	GAAGAC	2 cut(s)	592, 622
BpuEI	CTTGAG	3 cut(s)	332, 380, 863
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	662, 898
Bse3DI	GCAATG	2 cut(s)	151, 409
BseBI	CCWGG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	594, 660
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	2 cut(s)	151, 409
BseMII	CTCAG	2 cut(s)	239, 441
BseNI	ACTGG	2 cut(s)	662, 898
BseSI	GKGCMC	2 cut(s)	215, 533
BseXI	GCAGC	2 cut(s)	227, 418
BsgI	GTGCAG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	2 cut(s)	348, 658
BsiHKAI	GWGCWC	4 cut(s)	162, 533, 742, 879
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	2 cut(s)	173, 346
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	687, 780
BsmBI	CGTCTC	1 cut(s)	687
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	5 cut(s)	162, 215, 533, 742, 879
Bsp1407I	TGTACA	2 cut(s)	179, 666
Bsp143I	GATC	3 cut(s)	422, 502, 768
BspACI	CCGC	3 cut(s)	277, 323, 563
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	240, 442
BspLI	GGNNCC	5 cut(s)	6, 121, 350, 660, 770
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	417, 763, 776
BspQI	GCTCTTC	1 cut(s)	867
BspT107I	GGYRCC	2 cut(s)	348, 658
BsrDI	GCAATG	2 cut(s)	151, 409
BsrFI	RCCGGY	1 cut(s)	345
BsrGI	TGTACA	2 cut(s)	179, 666
BsrI	ACTGG	2 cut(s)	662, 898
BssAI	RCCGGY	1 cut(s)	345
BssMI	GATC	3 cut(s)	422, 502, 768
BssSI	CACGAG	1 cut(s)	401
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	5 cut(s)	598, 608, 621, 746, 791
Bst6I	CTCTTC	1 cut(s)	867
BstAUI	TGTACA	2 cut(s)	179, 666
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	4 cut(s)	248, 450, 680, 708
BstF5I	GGATG	2 cut(s)	594, 660
BstKTI	GATC	3 cut(s)	425, 505, 771
BstMAI	GTCTC	2 cut(s)	687, 780
BstMBI	GATC	3 cut(s)	422, 502, 768
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 273, 406, 883
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	3 cut(s)	267, 276, 520
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	2 cut(s)	385, 427
BstSLI	GKGCMC	2 cut(s)	215, 533
BstV1I	GCAGC	2 cut(s)	227, 418
BstV2I	GAAGAC	2 cut(s)	592, 622
BstX2I	RGATCY	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	594, 660
BtsI	GCAGTG	2 cut(s)	22, 868
BtsIMutI	CAGTG	6 cut(s)	22, 215, 465, 669, 868, 891
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	345
Csp6I	GTAC	4 cut(s)	180, 349, 667, 850
CviAII	CATG	9 cut(s)	264, 273, 342, 517, 521, 566, 585, 670, 759
CviQI	GTAC	4 cut(s)	180, 349, 667, 850
DdeI	CTNAG	4 cut(s)	248, 450, 680, 708
DpnI	GATC	3 cut(s)	424, 504, 770
DpnII	GATC	3 cut(s)	422, 502, 768
DraIII	CACNNNGTG	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Ecl136II	GAGCTC	3 cut(s)	160, 740, 877
Eco24I	GRGCYC	3 cut(s)	162, 742, 879
Eco53kI	GAGCTC	3 cut(s)	160, 740, 877
Eco88I	CYCGRG	1 cut(s)	650
EcoICRI	GAGCTC	3 cut(s)	160, 740, 877
EcoRII	CCWGG	1 cut(s)	7
EcoT22I	ATGCAT	1 cut(s)	522
EcoT38I	GRGCYC	3 cut(s)	162, 742, 879
Esp3I	CGTCTC	1 cut(s)	687
FaeI	CATG	9 cut(s)	267, 276, 345, 520, 524, 569, 588, 673, 762
FatI	CATG	9 cut(s)	263, 272, 341, 516, 520, 565, 584, 669, 758
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	241, 277, 407
FokI	GGATG	2 cut(s)	601, 667
FriOI	GRGCYC	3 cut(s)	162, 742, 879
Fsp4HI	GCNGC	3 cut(s)	241, 277, 407
FspBI	CTAG	2 cut(s)	35, 834
GluI	GCNGC	3 cut(s)	241, 277, 407
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	2 cut(s)	173, 346
Hin1II	CATG	9 cut(s)	267, 276, 345, 520, 524, 569, 588, 673, 762
HincII	GTYRAC	2 cut(s)	487, 514
HindII	GTYRAC	2 cut(s)	487, 514
HinfI	GANTC	4 cut(s)	38, 326, 822, 888
HpaII	CCGG	2 cut(s)	173, 346
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	5 cut(s)	487, 514, 531, 667, 752
Hpy188I	TCNGA	4 cut(s)	451, 614, 785, 806
Hpy188III	TCNNGA	6 cut(s)	35, 311, 368, 574, 652, 815
Hpy8I	GTNNAC	5 cut(s)	487, 514, 531, 667, 752
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	5 cut(s)	598, 608, 621, 746, 791
HpyCH4V	TGCA	6 cut(s)	20, 243, 256, 414, 520, 531
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 273, 406, 883
HpyF3I	CTNAG	4 cut(s)	248, 450, 680, 708
Hsp92II	CATG	9 cut(s)	267, 276, 345, 520, 524, 569, 588, 673, 762
KpnI	GGTACC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	422, 502, 768
LguI	GCTCTTC	1 cut(s)	867
LmnI	GCTCC	4 cut(s)	10, 125, 165, 737
Lsp1109I	GCAGC	2 cut(s)	227, 418
LweI	GCATC	3 cut(s)	290, 579, 789
MaeI	CTAG	2 cut(s)	35, 834
MaeIII	GTNAC	6 cut(s)	290, 460, 719, 791, 863, 889
MalI	GATC	3 cut(s)	424, 504, 770
MboI	GATC	3 cut(s)	422, 502, 768
MboII	GAAGA	3 cut(s)	592, 627, 884
MflI	RGATCY	1 cut(s)	768
MhlI	GDGCHC	5 cut(s)	162, 215, 533, 742, 879
MluCI	AATT	4 cut(s)	131, 184, 201, 355
MlyI	GAGTC	2 cut(s)	816, 897
MmeI	TCCRAC	2 cut(s)	500, 715
MnlI	CCTC	6 cut(s)	58, 79, 207, 562, 631, 697
Mph1103I	ATGCAT	1 cut(s)	522
MseI	TTAA	2 cut(s)	69, 188
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	2 cut(s)	173, 346
MspR9I	CCNGG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	4 cut(s)	219, 273, 406, 883
NdeII	GATC	3 cut(s)	422, 502, 768
NlaIII	CATG	9 cut(s)	267, 276, 345, 520, 524, 569, 588, 673, 762
NlaIV	GGNNCC	5 cut(s)	6, 121, 350, 660, 770
NmuCI	GTSAC	4 cut(s)	460, 791, 863, 889
NsiI	ATGCAT	1 cut(s)	522
NspI	RCATGY	3 cut(s)	267, 276, 520
PciSI	GCTCTTC	1 cut(s)	867
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	2 cut(s)	38, 326
PkrI	GCNGC	3 cut(s)	242, 278, 408
PleI	GAGTC	2 cut(s)	816, 896
PpsI	GAGTC	2 cut(s)	816, 896
Psp124BI	GAGCTC	3 cut(s)	162, 742, 879
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	5 cut(s)	6, 121, 350, 660, 770
PsuI	RGATCY	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	432
RsaI	GTAC	4 cut(s)	181, 350, 668, 851
RsaNI	GTAC	4 cut(s)	180, 349, 667, 850
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	3 cut(s)	162, 742, 879
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	2 cut(s)	69, 188
SatI	GCNGC	3 cut(s)	241, 277, 407
Sau3AI	GATC	3 cut(s)	422, 502, 768
SchI	GAGTC	2 cut(s)	816, 897
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	5 cut(s)	162, 215, 533, 742, 879
SfaNI	GCATC	3 cut(s)	290, 579, 789
SfcI	CTRYAG	2 cut(s)	385, 427
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	3 cut(s)	311, 395, 878
SmoI	CTYRAG	3 cut(s)	311, 395, 878
Sse9I	AATT	4 cut(s)	131, 184, 201, 355
SsiI	CCGC	3 cut(s)	277, 323, 563
SspMI	CTAG	2 cut(s)	35, 834
SstI	GAGCTC	3 cut(s)	162, 742, 879
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	5 cut(s)	598, 608, 621, 746, 791
TaqI	TCGA	4 cut(s)	47, 140, 421, 573
TasI	AATT	4 cut(s)	131, 184, 201, 355
TatI	WGTACW	3 cut(s)	179, 666, 849
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	38, 326
Tru1I	TTAA	2 cut(s)	69, 188
Tru9I	TTAA	2 cut(s)	69, 188
TscAI	CASTG	6 cut(s)	22, 215, 465, 669, 868, 898
TseFI	GTSAC	4 cut(s)	460, 791, 863, 889
TseI	GCWGC	2 cut(s)	240, 406
Tsp45I	GTSAC	4 cut(s)	460, 791, 863, 889
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	2 cut(s)	834, 913
TspRI	CASTG	6 cut(s)	22, 215, 465, 669, 868, 898
VneI	GTGCAC	1 cut(s)	529
XapI	RAATTY	3 cut(s)	131, 184, 355
XbaI	TCTAGA	1 cut(s)	34
XceI	RCATGY	3 cut(s)	267, 276, 520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XspI	CTAG	2 cut(s)	35, 834
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.