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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom11g03030 pycom13g03180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1657 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 837, 1158, 1267 |
| AccII | CGCG | 3 cut(s) | 1033, 1035, 1167 |
| AciI | CCGC | 5 cut(s) | 820, 896, 1031, 1088, 1688 |
| AclWI | GGATC | 3 cut(s) | 1679, 1692, 1880 |
| AcoI | YGGCCR | 1 cut(s) | 1561 |
| AcsI | RAATTY | 4 cut(s) | 96, 176, 1099, 2027 |
| AcvI | CACGTG | 2 cut(s) | 157, 1937 |
| AfaI | GTAC | 2 cut(s) | 1043, 1284 |
| AflII | CTTAAG | 1 cut(s) | 2002 |
| AflIII | ACRYGT | 2 cut(s) | 154, 1132 |
| AgsI | TTSAA | 4 cut(s) | 1432, 1791, 1883, 2032 |
| AjiI | CACGTC | 2 cut(s) | 595, 1133 |
| AjnI | CCWGG | 1 cut(s) | 1142 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 162, 194, 210, 242 |
| AleI | CACNNNNGTG | 1 cut(s) | 213 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1167, 1199 |
| AluBI | AGCT | 6 cut(s) | 185, 524, 672, 749, 1535, 1715 |
| AluI | AGCT | 6 cut(s) | 185, 524, 672, 749, 1535, 1715 |
| Alw21I | GWGCWC | 1 cut(s) | 510 |
| Alw26I | GTCTC | 1 cut(s) | 1202 |
| Alw44I | GTGCAC | 1 cut(s) | 506 |
| AlwI | GGATC | 3 cut(s) | 1679, 1692, 1880 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 837 |
| Ama87I | CYCGRG | 2 cut(s) | 631, 1178 |
| ApaI | GGGCCC | 2 cut(s) | 284, 933 |
| ApaLI | GTGCAC | 1 cut(s) | 506 |
| ApeKI | GCWGC | 7 cut(s) | 512, 1148, 1162, 1535, 1632, 1715, 1945 |
| ApoI | RAATTY | 4 cut(s) | 96, 176, 1099, 2027 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 641 |
| AspA2I | CCTAGG | 1 cut(s) | 64 |
| AspLEI | GCGC | 3 cut(s) | 164, 1035, 1167 |
| AsuC2I | CCSGG | 1 cut(s) | 807 |
| AsuHPI | GGTGA | 3 cut(s) | 712, 1705, 1928 |
| AsuNHI | GCTAGC | 1 cut(s) | 707 |
| AvaI | CYCGRG | 2 cut(s) | 631, 1178 |
| AvaII | GGWCC | 2 cut(s) | 663, 1183 |
| AvrII | CCTAGG | 1 cut(s) | 64 |
| BaeGI | GKGCMC | 5 cut(s) | 284, 510, 933, 1583, 1660 |
| BalI | TGGCCA | 1 cut(s) | 1563 |
| BamHI | GGATCC | 1 cut(s) | 1684 |
| BanI | GGYRCC | 1 cut(s) | 1657 |
| BanII | GRGCYC | 5 cut(s) | 284, 876, 933, 1736, 1759 |
| BauI | CACGAG | 3 cut(s) | 713, 869, 1651 |
| BbrPI | CACGTG | 2 cut(s) | 157, 1937 |
| Bbv12I | GWGCWC | 1 cut(s) | 510 |
| BbvI | GCAGC | 7 cut(s) | 499, 1135, 1174, 1522, 1644, 1702, 1932 |
| BccI | CCATC | 5 cut(s) | 184, 1509, 1567, 1622, 1913 |
| BceAI | ACGGC | 1 cut(s) | 720 |
| BciT130I | CCWGG | 1 cut(s) | 1144 |
| BcnI | CCSGG | 1 cut(s) | 807 |
| BcoDI | GTCTC | 1 cut(s) | 1202 |
| BfaI | CTAG | 5 cut(s) | 65, 708, 909, 1245, 1547 |
| BfrI | CTTAAG | 1 cut(s) | 2002 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1145 |
| BisI | GCNGC | 7 cut(s) | 513, 1149, 1163, 1536, 1633, 1716, 1946 |
| BlnI | CCTAGG | 1 cut(s) | 64 |
| BlsI | GCNGC | 7 cut(s) | 514, 1150, 1164, 1537, 1634, 1717, 1947 |
| Bme1390I | CCNGG | 2 cut(s) | 807, 1144 |
| Bme18I | GGWCC | 2 cut(s) | 663, 1183 |
| BmeT110I | CYCGRG | 2 cut(s) | 631, 1178 |
| BmgBI | CACGTC | 2 cut(s) | 595, 1133 |
| BmrFI | CCNGG | 2 cut(s) | 807, 1144 |
| BmrI | ACTGGG | 1 cut(s) | 1012 |
| BmsI | GCATC | 1 cut(s) | 1945 |
| BmtI | GCTAGC | 1 cut(s) | 711 |
| BmuI | ACTGGG | 1 cut(s) | 1012 |
| BoxI | GACNNNNGTC | 1 cut(s) | 593 |
| BpmI | CTGGAG | 1 cut(s) | 729 |
| BpuEI | CTTGAG | 1 cut(s) | 1835 |
| BpuMI | CCSGG | 1 cut(s) | 807 |
| BsaAI | YACGTR | 3 cut(s) | 157, 1937, 2110 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1051, 1081 |
| Bse118I | RCCGGY | 2 cut(s) | 1297, 1690 |
| Bse1I | ACTGG | 1 cut(s) | 1018 |
| Bse3DI | GCAATG | 1 cut(s) | 1272 |
| BseBI | CCWGG | 1 cut(s) | 1144 |
| BseGI | GGATG | 1 cut(s) | 1960 |
| BseMI | GCAATG | 1 cut(s) | 1272 |
| BseMII | CTCAG | 1 cut(s) | 346 |
| BseNI | ACTGG | 1 cut(s) | 1018 |
| BseRI | GAGGAG | 1 cut(s) | 484 |
| BseSI | GKGCMC | 5 cut(s) | 284, 510, 933, 1583, 1660 |
| BseXI | GCAGC | 7 cut(s) | 499, 1135, 1174, 1522, 1644, 1702, 1932 |
| BseYI | CCCAGC | 1 cut(s) | 961 |
| BsgI | GTGCAG | 1 cut(s) | 498 |
| Bsh1236I | CGCG | 3 cut(s) | 1033, 1035, 1167 |
| BshNI | GGYRCC | 1 cut(s) | 1657 |
| BsiHKAI | GWGCWC | 1 cut(s) | 510 |
| BsiHKCI | CYCGRG | 2 cut(s) | 631, 1178 |
| BsiSI | CCGG | 3 cut(s) | 806, 1298, 1691 |
| BslFI | GGGAC | 2 cut(s) | 45, 1169 |
| BsmAI | GTCTC | 1 cut(s) | 1202 |
| BsmFI | GGGAC | 2 cut(s) | 45, 1169 |
| BsoBI | CYCGRG | 2 cut(s) | 631, 1178 |
| Bsp120I | GGGCCC | 2 cut(s) | 280, 929 |
| Bsp1286I | GDGCHC | 8 cut(s) | 284, 510, 876, 933, 1583, 1660, 1736, 1759 |
| Bsp1407I | TGTACA | 1 cut(s) | 1282 |
| Bsp143I | GATC | 5 cut(s) | 326, 478, 1684, 1846, 1885 |
| Bsp19I | CCATGG | 4 cut(s) | 275, 1024, 1083, 1157 |
| BspACI | CCGC | 5 cut(s) | 820, 896, 1031, 1088, 1688 |
| BspCNI | CTCAG | 1 cut(s) | 345 |
| BspFNI | CGCG | 3 cut(s) | 1033, 1035, 1167 |
| BspOI | GCTAGC | 1 cut(s) | 711 |
| BspPI | GGATC | 3 cut(s) | 1679, 1692, 1880 |
| BspT107I | GGYRCC | 1 cut(s) | 1657 |
| BspTI | CTTAAG | 1 cut(s) | 2002 |
| BsrDI | GCAATG | 1 cut(s) | 1272 |
| BsrFI | RCCGGY | 2 cut(s) | 1297, 1690 |
| BsrGI | TGTACA | 1 cut(s) | 1282 |
| BsrI | ACTGG | 1 cut(s) | 1018 |
| BssAI | RCCGGY | 2 cut(s) | 1297, 1690 |
| BssMI | GATC | 5 cut(s) | 326, 478, 1684, 1846, 1885 |
| BssSI | CACGAG | 3 cut(s) | 713, 869, 1651 |
| BssT1I | CCWWGG | 6 cut(s) | 64, 120, 275, 1024, 1083, 1157 |
| Bst2BI | CACGAG | 3 cut(s) | 713, 869, 1651 |
| Bst2UI | CCWGG | 1 cut(s) | 1144 |
| Bst4CI | ACNGT | 1 cut(s) | 1451 |
| Bst6I | CTCTTC | 2 cut(s) | 362, 737 |
| BstAFI | CTTAAG | 1 cut(s) | 2002 |
| BstAUI | TGTACA | 1 cut(s) | 1282 |
| BstBAI | YACGTR | 3 cut(s) | 157, 1937, 2110 |
| BstC8I | GCNNGC | 5 cut(s) | 510, 709, 1031, 1838, 1960 |
| BstDEI | CTNAG | 3 cut(s) | 186, 332, 448 |
| BstDSI | CCRYGG | 4 cut(s) | 275, 1024, 1083, 1157 |
| BstEII | GGTNACC | 1 cut(s) | 1693 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 583, 1651 |
| BstF5I | GGATG | 1 cut(s) | 1960 |
| BstFNI | CGCG | 3 cut(s) | 1033, 1035, 1167 |
| BstHHI | GCGC | 3 cut(s) | 164, 1035, 1167 |
| BstKTI | GATC | 5 cut(s) | 329, 481, 1687, 1849, 1888 |
| BstMAI | GTCTC | 1 cut(s) | 1202 |
| BstMBI | GATC | 5 cut(s) | 326, 478, 1684, 1846, 1885 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 521, 1094, 1145 |
| BstNI | CCWGG | 1 cut(s) | 1144 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 593 |
| BstPI | GGTNACC | 1 cut(s) | 1693 |
| BstSCI | CCNGG | 2 cut(s) | 805, 1142 |
| BstSLI | GKGCMC | 5 cut(s) | 284, 510, 933, 1583, 1660 |
| BstSNI | TACGTA | 1 cut(s) | 2110 |
| BstUI | CGCG | 3 cut(s) | 1033, 1035, 1167 |
| BstV1I | GCAGC | 7 cut(s) | 499, 1135, 1174, 1522, 1644, 1702, 1932 |
| BstX2I | RGATCY | 2 cut(s) | 1684, 1885 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1025 |
| BstYI | RGATCY | 2 cut(s) | 1684, 1885 |
| BtgI | CCRYGG | 4 cut(s) | 275, 1024, 1083, 1157 |
| BtrI | CACGTC | 2 cut(s) | 595, 1133 |
| BtsCI | GGATG | 1 cut(s) | 1960 |
| Cac8I | GCNNGC | 5 cut(s) | 510, 709, 1031, 1838, 1960 |
| CaiI | CAGNNNCTG | 1 cut(s) | 837 |
| CfoI | GCGC | 3 cut(s) | 164, 1035, 1167 |
| Cfr10I | RCCGGY | 2 cut(s) | 1297, 1690 |
| CseI | GACGC | 1 cut(s) | 1206 |
| Csp6I | GTAC | 2 cut(s) | 1042, 1283 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1923, 1958 |
| CviAII | CATG | 8 cut(s) | 276, 437, 1025, 1084, 1125, 1158, 1262, 1907 |
| CviQI | GTAC | 2 cut(s) | 1042, 1283 |
| DdeI | CTNAG | 3 cut(s) | 186, 332, 448 |
| DpnI | GATC | 5 cut(s) | 328, 480, 1686, 1848, 1887 |
| DpnII | GATC | 5 cut(s) | 326, 478, 1684, 1846, 1885 |
| DraI | TTTAAA | 2 cut(s) | 753, 1980 |
| EaeI | YGGCCR | 1 cut(s) | 1561 |
| Eam1104I | CTCTTC | 2 cut(s) | 362, 737 |
| EarI | CTCTTC | 2 cut(s) | 362, 737 |
| EciI | GGCGGA | 1 cut(s) | 1677 |
| Eco105I | TACGTA | 1 cut(s) | 2110 |
| Eco130I | CCWWGG | 6 cut(s) | 64, 120, 275, 1024, 1083, 1157 |
| Eco147I | AGGCCT | 2 cut(s) | 913, 1877 |
| Eco24I | GRGCYC | 5 cut(s) | 284, 876, 933, 1736, 1759 |
| Eco47I | GGWCC | 2 cut(s) | 663, 1183 |
| Eco72I | CACGTG | 2 cut(s) | 157, 1937 |
| Eco88I | CYCGRG | 2 cut(s) | 631, 1178 |
| Eco91I | GGTNACC | 1 cut(s) | 1693 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 583, 1651 |
| EcoO109I | RGGNCCY | 2 cut(s) | 280, 1183 |
| EcoO65I | GGTNACC | 1 cut(s) | 1693 |
| EcoRII | CCWGG | 1 cut(s) | 1142 |
| EcoT14I | CCWWGG | 6 cut(s) | 64, 120, 275, 1024, 1083, 1157 |
| EcoT22I | ATGCAT | 1 cut(s) | 1807 |
| EcoT38I | GRGCYC | 5 cut(s) | 284, 876, 933, 1736, 1759 |
| ErhI | CCWWGG | 6 cut(s) | 64, 120, 275, 1024, 1083, 1157 |
| FaeI | CATG | 8 cut(s) | 279, 440, 1028, 1087, 1128, 1161, 1265, 1910 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1996, 2028 |
| FaqI | GGGAC | 2 cut(s) | 45, 1169 |
| FatI | CATG | 8 cut(s) | 275, 436, 1024, 1083, 1124, 1157, 1261, 1906 |
| FauI | CCCGC | 3 cut(s) | 827, 903, 1038 |
| FauNDI | CATATG | 1 cut(s) | 1290 |
| Fnu4HI | GCNGC | 7 cut(s) | 513, 1149, 1163, 1536, 1633, 1716, 1946 |
| FokI | GGATG | 1 cut(s) | 1967 |
| FriOI | GRGCYC | 5 cut(s) | 284, 876, 933, 1736, 1759 |
| Fsp4HI | GCNGC | 7 cut(s) | 513, 1149, 1163, 1536, 1633, 1716, 1946 |
| FspBI | CTAG | 5 cut(s) | 65, 708, 909, 1245, 1547 |
| GlaI | GCGC | 3 cut(s) | 163, 1034, 1166 |
| GluI | GCNGC | 7 cut(s) | 513, 1149, 1163, 1536, 1633, 1716, 1946 |
| GsaI | CCCAGC | 1 cut(s) | 965 |
| GsuI | CTGGAG | 1 cut(s) | 729 |
| HapII | CCGG | 3 cut(s) | 806, 1298, 1691 |
| HgaI | GACGC | 1 cut(s) | 1206 |
| HhaI | GCGC | 3 cut(s) | 164, 1035, 1167 |
| Hin1II | CATG | 8 cut(s) | 279, 440, 1028, 1087, 1128, 1161, 1265, 1910 |
| Hin6I | GCGC | 3 cut(s) | 162, 1033, 1165 |
| HinP1I | GCGC | 3 cut(s) | 162, 1033, 1165 |
| HinfI | GANTC | 7 cut(s) | 111, 139, 589, 834, 882, 985, 1483 |
| HpaII | CCGG | 3 cut(s) | 806, 1298, 1691 |
| HphI | GGTGA | 3 cut(s) | 712, 1705, 1928 |
| Hpy166II | GTNNAC | 3 cut(s) | 508, 1044, 1283 |
| Hpy188I | TCNGA | 7 cut(s) | 335, 667, 689, 984, 1121, 1619, 1644 |
| Hpy188III | TCNNGA | 5 cut(s) | 831, 1375, 1592, 1651, 1710 |
| Hpy8I | GTNNAC | 3 cut(s) | 508, 1044, 1283 |
| Hpy99I | CGWCG | 6 cut(s) | 147, 549, 559, 661, 1134, 1222 |
| HpyAV | CCTTC | 4 cut(s) | 212, 309, 824, 1657 |
| HpyCH4III | ACNGT | 1 cut(s) | 1451 |
| HpyCH4IV | ACGT | 6 cut(s) | 156, 214, 594, 1132, 1936, 2109 |
| HpyCH4V | TGCA | 8 cut(s) | 74, 508, 515, 1056, 1265, 1805, 1906, 1997 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 521, 1094, 1145 |
| HpyF3I | CTNAG | 3 cut(s) | 186, 332, 448 |
| HpySE526I | ACGT | 6 cut(s) | 156, 214, 594, 1132, 1936, 2109 |
| Hsp92II | CATG | 8 cut(s) | 279, 440, 1028, 1087, 1128, 1161, 1265, 1910 |
| HspAI | GCGC | 3 cut(s) | 162, 1033, 1165 |
| Kzo9I | GATC | 5 cut(s) | 326, 478, 1684, 1846, 1885 |
| LmnI | GCTCC | 4 cut(s) | 182, 802, 1121, 1762 |
| Lsp1109I | GCAGC | 7 cut(s) | 499, 1135, 1174, 1522, 1644, 1702, 1932 |
| LweI | GCATC | 1 cut(s) | 1945 |
| MaeI | CTAG | 5 cut(s) | 65, 708, 909, 1245, 1547 |
| MaeII | ACGT | 6 cut(s) | 156, 214, 594, 1132, 1936, 2109 |
| MaeIII | GTNAC | 5 cut(s) | 700, 1108, 1229, 1589, 1693 |
| MalI | GATC | 5 cut(s) | 328, 480, 1686, 1848, 1887 |
| MboI | GATC | 5 cut(s) | 326, 478, 1684, 1846, 1885 |
| MboII | GAAGA | 8 cut(s) | 74, 294, 349, 724, 840, 1492, 1895, 2056 |
| MflI | RGATCY | 2 cut(s) | 1684, 1885 |
| MhlI | GDGCHC | 8 cut(s) | 284, 510, 876, 933, 1583, 1660, 1736, 1759 |
| MlsI | TGGCCA | 1 cut(s) | 1563 |
| MluNI | TGGCCA | 1 cut(s) | 1563 |
| MlyI | GAGTC | 5 cut(s) | 105, 133, 583, 891, 979 |
| MmeI | TCCRAC | 5 cut(s) | 690, 712, 1007, 1667, 1947 |
| Mox20I | TGGCCA | 1 cut(s) | 1563 |
| Mph1103I | ATGCAT | 1 cut(s) | 1807 |
| MroXI | GAANNNNTTC | 1 cut(s) | 641 |
| MscI | TGGCCA | 1 cut(s) | 1563 |
| MslI | CAYNNNNRTG | 3 cut(s) | 213, 435, 1088 |
| Msp20I | TGGCCA | 1 cut(s) | 1563 |
| MspCI | CTTAAG | 1 cut(s) | 2002 |
| MspI | CCGG | 3 cut(s) | 806, 1298, 1691 |
| MspR9I | CCNGG | 2 cut(s) | 807, 1144 |
| MvaI | CCWGG | 1 cut(s) | 1144 |
| MvnI | CGCG | 3 cut(s) | 1033, 1035, 1167 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 521, 1094, 1145 |
| NciI | CCSGG | 1 cut(s) | 807 |
| NcoI | CCATGG | 4 cut(s) | 275, 1024, 1083, 1157 |
| NdeI | CATATG | 1 cut(s) | 1290 |
| NdeII | GATC | 5 cut(s) | 326, 478, 1684, 1846, 1885 |
| NheI | GCTAGC | 1 cut(s) | 707 |
| NlaIII | CATG | 8 cut(s) | 279, 440, 1028, 1087, 1128, 1161, 1265, 1910 |
| NmeAIII | GCCGAG | 1 cut(s) | 554 |
| NmuCI | GTSAC | 5 cut(s) | 700, 1108, 1229, 1589, 1693 |
| NsiI | ATGCAT | 1 cut(s) | 1807 |
| OliI | CACNNNNGTG | 1 cut(s) | 213 |
| PasI | CCCWGGG | 1 cut(s) | 1143 |
| PceI | AGGCCT | 2 cut(s) | 913, 1877 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1599 |
| PdmI | GAANNNNTTC | 1 cut(s) | 641 |
| PfeI | GAWTC | 2 cut(s) | 834, 1483 |
| PflFI | GACNNNGTC | 2 cut(s) | 661, 1235 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 837, 1158, 1267 |
| PkrI | GCNGC | 7 cut(s) | 514, 1150, 1164, 1537, 1634, 1717, 1947 |
| PleI | GAGTC | 5 cut(s) | 105, 133, 583, 890, 979 |
| PmaCI | CACGTG | 2 cut(s) | 157, 1937 |
| PmlI | CACGTG | 2 cut(s) | 157, 1937 |
| PpsI | GAGTC | 5 cut(s) | 105, 133, 583, 890, 979 |
| Ppu21I | YACGTR | 3 cut(s) | 157, 1937, 2110 |
| PpuMI | RGGWCCY | 1 cut(s) | 1183 |
| PshAI | GACNNNNGTC | 1 cut(s) | 593 |
| Psp5II | RGGWCCY | 1 cut(s) | 1183 |
| Psp6I | CCWGG | 1 cut(s) | 1142 |
| PspCI | CACGTG | 2 cut(s) | 157, 1937 |
| PspEI | GGTNACC | 1 cut(s) | 1693 |
| PspFI | CCCAGC | 1 cut(s) | 961 |
| PspGI | CCWGG | 1 cut(s) | 1142 |
| PspOMI | GGGCCC | 2 cut(s) | 280, 929 |
| PspPPI | RGGWCCY | 1 cut(s) | 1183 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 543, 575 |
| PstNI | CAGNNNCTG | 1 cut(s) | 837 |
| PsuI | RGATCY | 2 cut(s) | 1684, 1885 |
| PsyI | GACNNNGTC | 2 cut(s) | 661, 1235 |
| RsaI | GTAC | 2 cut(s) | 1043, 1284 |
| RsaNI | GTAC | 2 cut(s) | 1042, 1283 |
| RseI | CAYNNNNRTG | 3 cut(s) | 213, 435, 1088 |
| SatI | GCNGC | 7 cut(s) | 513, 1149, 1163, 1536, 1633, 1716, 1946 |
| Sau3AI | GATC | 5 cut(s) | 326, 478, 1684, 1846, 1885 |
| SchI | GAGTC | 5 cut(s) | 105, 133, 583, 891, 979 |
| ScrFI | CCNGG | 2 cut(s) | 807, 1144 |
| SduI | GDGCHC | 8 cut(s) | 284, 510, 876, 933, 1583, 1660, 1736, 1759 |
| SfaNI | GCATC | 1 cut(s) | 1945 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1690 |
| SinI | GGWCC | 2 cut(s) | 663, 1183 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 213, 435, 1088 |
| SmlI | CTYRAG | 2 cut(s) | 1850, 2002 |
| SmoI | CTYRAG | 2 cut(s) | 1850, 2002 |
| SnaBI | TACGTA | 1 cut(s) | 2110 |
| SseBI | AGGCCT | 2 cut(s) | 913, 1877 |
| SsiI | CCGC | 5 cut(s) | 820, 896, 1031, 1088, 1688 |
| SspMI | CTAG | 5 cut(s) | 65, 708, 909, 1245, 1547 |
| StuI | AGGCCT | 2 cut(s) | 913, 1877 |
| StyD4I | CCNGG | 2 cut(s) | 805, 1142 |
| StyI | CCWWGG | 6 cut(s) | 64, 120, 275, 1024, 1083, 1157 |
| TaaI | ACNGT | 1 cut(s) | 1451 |
| TaiI | ACGT | 6 cut(s) | 159, 217, 597, 1135, 1939, 2112 |
| TaqI | TCGA | 4 cut(s) | 544, 656, 676, 1250 |
| TatI | WGTACW | 2 cut(s) | 1041, 1282 |
| TfiI | GAWTC | 2 cut(s) | 834, 1483 |
| TseFI | GTSAC | 5 cut(s) | 700, 1108, 1229, 1589, 1693 |
| TseI | GCWGC | 7 cut(s) | 512, 1148, 1162, 1535, 1632, 1715, 1945 |
| Tsp45I | GTSAC | 5 cut(s) | 700, 1108, 1229, 1589, 1693 |
| TspDTI | ATGAA | 3 cut(s) | 165, 1341, 1431 |
| TspGWI | ACGGA | 1 cut(s) | 815 |
| Tth111I | GACNNNGTC | 2 cut(s) | 661, 1235 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 837, 1158, 1267 |
| Vha464I | CTTAAG | 1 cut(s) | 2002 |
| VneI | GTGCAC | 1 cut(s) | 506 |
| VpaK11BI | GGWCC | 2 cut(s) | 663, 1183 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 583, 1651 |
| XapI | RAATTY | 4 cut(s) | 96, 176, 1099, 2027 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1090 |
| XmaJI | CCTAGG | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 1 cut(s) | 641 |
| XspI | CTAG | 5 cut(s) | 65, 708, 909, 1245, 1547 |
| Zsp2I | ATGCAT | 1 cut(s) | 1807 |