Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0021898

Physical Location & Seq

Genomic Coordinates Forward (+)

2411546 .. 2413639

Gene Structure 2094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTGCAGTGTATAGGCGGGTTAAAGCATTTATGTGCTTCCCTACTGAGTTGCTGTATCGATCTTGACTTGTACAAACAATCGAGAGGCTTAGAAGACCCTGAAATTCTAGCAAGGGAGACAGTGTTCAGTGTGAGTGAAATAGAGGCACTTTACGAGCTATTTAAGAAGATCAGCAGTGCAGTGATTGATGACGGGTTGATTAACAAGGAGGAATTTCAACTGGCATTATTCAAGACAAACAAGAAAGAGAGCTTGTTTGCTCGATCGTTTGACTTGTTCGACACAAAGCACAATGGAATACTAGGTTTTGAAGAGTTTGCTCGAGCTCTCTCTGTCTTTCATCCCAACGCCCCTATTGATGACAAGATTGAGTTTTCGTTTCAATTATATGATCTCAAGCAGCAAGGCTTCATTGAAAGGCAGGAGGTGAAGCAAATGGTTGTGGCTACTCTCGCAGAATCTGGCATGAATCTTTCGGATGATGTGATAGAGAGTATAATTGATAAGACCTTTGAGGAAGCTGATACAAAACATGATGGGAGGATCGACAAGGAAGAGTGGAGAAGCCTTGTTTTGCGACACCCGTCCCTTCTTAAAAATATGACGCTCCAATACCTCAAACATCACCACAACATTCCCGAGCTTCGTATTTCACTCACAAGTGGACGACACCTGAAGTCGAAAATTTCCGATTTTAAGCTCCAACAGACGTCATTCTTTGATTCGGTTGTGGTTTGCATGCTTCTGAAGAATGGGAGGGGCTCACTATTGTGTAAAAGGGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

264

Amino Acids

30.1

Weight (kDa)

6.16

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	122 - 187	2.4e-09	EF-hand domain pair
EF-hand_5	PF13202	168 - 192	8.6e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16350 AT4G16350
malus_domestica	MD11G1037200.v1.1
pyrus_communis	pycom11g03090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	716
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	3 cut(s)	105, 215, 687
AcuI	CTGAAG	2 cut(s)	698, 770
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	221, 235, 314, 386, 419
AleI	CACNNNNGTG	1 cut(s)	772
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	6 cut(s)	160, 255, 329, 524, 646, 703
AluI	AGCT	6 cut(s)	160, 255, 329, 524, 646, 703
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	2 cut(s)	324, 641
AoxI	GGCC	1 cut(s)	783
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	3 cut(s)	105, 215, 687
AspS9I	GGNCC	1 cut(s)	783
AsuHPI	GGTGA	2 cut(s)	442, 620
AvaI	CYCGRG	2 cut(s)	324, 641
BanII	GRGCYC	2 cut(s)	331, 767
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	533
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	110, 305
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
BmeT110I	CYCGRG	2 cut(s)	324, 641
BmgT120I	GGNCC	1 cut(s)	783
BoxI	GACNNNNGTC	1 cut(s)	586
BpiI	GAAGAC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	713
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse1I	ACTGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	60
BseGI	GGATG	2 cut(s)	343, 487
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	785
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	331
BsiHKCI	CYCGRG	2 cut(s)	324, 641
BslFI	GGGAC	1 cut(s)	574
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	785
BsoBI	CYCGRG	2 cut(s)	324, 641
Bsp1286I	GDGCHC	2 cut(s)	331, 767
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	61, 171, 266, 394, 546
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	785
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	60
BspPI	GGATC	1 cut(s)	554
BsrGI	TGTACA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	5 cut(s)	61, 171, 266, 394, 546
BssNI	GRCGYC	1 cut(s)	713
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	309, 552
BstACI	GRCGYC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	743
BstDEI	CTNAG	2 cut(s)	47, 91
BstF5I	GGATG	2 cut(s)	343, 487
BstKTI	GATC	5 cut(s)	64, 174, 269, 397, 549
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	5 cut(s)	61, 171, 266, 394, 546
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	745
BstPAI	GACNNNNGTC	1 cut(s)	586
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	785
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	343, 487
BtsI	GCAGTG	3 cut(s)	14, 184, 189
BtsIMutI	CAGTG	5 cut(s)	14, 129, 136, 184, 189
Cac8I	GCNNGC	1 cut(s)	743
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	783
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	3 cut(s)	469, 536, 742
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	2 cut(s)	47, 91
DpnI	GATC	5 cut(s)	63, 173, 268, 396, 548
DpnII	GATC	5 cut(s)	61, 171, 266, 394, 546
Eam1104I	CTCTTC	2 cut(s)	309, 552
EarI	CTCTTC	2 cut(s)	309, 552
Ecl136II	GAGCTC	1 cut(s)	329
Eco24I	GRGCYC	2 cut(s)	331, 767
Eco53kI	GAGCTC	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	698, 770
Eco88I	CYCGRG	2 cut(s)	324, 641
EcoICRI	GAGCTC	1 cut(s)	329
EcoT38I	GRGCYC	2 cut(s)	331, 767
FaeI	CATG	3 cut(s)	472, 539, 745
FaiI	YATR	9 cut(s)	14, 34, 391, 393, 470, 500, 537, 605, 743
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	3 cut(s)	468, 535, 741
FauI	CCCGC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	330, 494
FriOI	GRGCYC	2 cut(s)	331, 767
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	110, 305
GluI	GCNGC	1 cut(s)	404
HaeIII	GGCC	1 cut(s)	785
HgaI	GACGC	1 cut(s)	616
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	3 cut(s)	472, 539, 745
HinfI	GANTC	3 cut(s)	461, 472, 725
HphI	GGTGA	2 cut(s)	442, 620
Hpy166II	GTNNAC	1 cut(s)	668
Hpy188I	TCNGA	3 cut(s)	481, 694, 750
Hpy188III	TCNNGA	4 cut(s)	65, 84, 235, 641
Hpy8I	GTNNAC	1 cut(s)	668
HpyAV	CCTTC	1 cut(s)	602
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	3 cut(s)	7, 182, 741
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	47, 91
HpySE526I	ACGT	1 cut(s)	713
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	3 cut(s)	472, 539, 745
Kzo9I	GATC	5 cut(s)	61, 171, 266, 394, 546
LmnI	GCTCC	2 cut(s)	615, 708
LpnPI	CCDG	5 cut(s)	114, 209, 410, 450, 689
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	110, 305
MaeII	ACGT	1 cut(s)	713
MalI	GATC	5 cut(s)	63, 173, 268, 396, 548
MboI	GATC	5 cut(s)	61, 171, 266, 394, 546
MboII	GAAGA	5 cut(s)	107, 181, 326, 569, 763
MhlI	GDGCHC	2 cut(s)	331, 767
MluCI	AATT	5 cut(s)	105, 215, 386, 501, 687
MmeI	TCCRAC	1 cut(s)	730
MnlI	CCTC	8 cut(s)	80, 139, 205, 421, 511, 537, 629, 753
MseI	TTAA	5 cut(s)	23, 165, 204, 597, 699
MslI	CAYNNNNRTG	2 cut(s)	33, 772
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	5 cut(s)	61, 171, 266, 394, 546
NlaIII	CATG	3 cut(s)	472, 539, 745
NspI	RCATGY	1 cut(s)	745
OliI	CACNNNNGTG	1 cut(s)	772
PaeI	GCATGC	1 cut(s)	745
PaeR7I	CTCGAG	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	461, 472, 725
PkrI	GCNGC	1 cut(s)	405
Ple19I	CGATCG	1 cut(s)	269
PshAI	GACNNNNGTC	1 cut(s)	586
Psp124BI	GAGCTC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	783
PspXI	VCTCGAGB	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	464
PvuI	CGATCG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	33, 772
SacI	GAGCTC	1 cut(s)	331
SaqAI	TTAA	5 cut(s)	23, 165, 204, 597, 699
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	5 cut(s)	61, 171, 266, 394, 546
Sau96I	GGNCC	1 cut(s)	783
SduI	GDGCHC	2 cut(s)	331, 767
Sfr274I	CTCGAG	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	33, 772
SmlI	CTYRAG	2 cut(s)	324, 398
SmoI	CTYRAG	2 cut(s)	324, 398
SphI	GCATGC	1 cut(s)	745
Sse9I	AATT	5 cut(s)	105, 215, 386, 501, 687
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	2 cut(s)	110, 305
SstI	GAGCTC	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	716
TaqI	TCGA	7 cut(s)	60, 83, 265, 282, 325, 549, 683
TasI	AATT	5 cut(s)	105, 215, 386, 501, 687
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	461, 472, 725
Tru1I	TTAA	5 cut(s)	23, 165, 204, 597, 699
Tru9I	TTAA	5 cut(s)	23, 165, 204, 597, 699
TscAI	CASTG	5 cut(s)	14, 129, 136, 184, 189
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	332, 403, 485
TspRI	CASTG	5 cut(s)	14, 129, 136, 184, 189
XapI	RAATTY	3 cut(s)	105, 215, 687
XceI	RCATGY	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	324
XspI	CTAG	2 cut(s)	110, 305
ZraI	GACGTC	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.