DEAD-box ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD14G1172400.v1.1 |
| pyrus_communis | pycom11g03150 |
| rosa_multiflora | Rmu_co8128650.1_g000001 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 154 |
| AclWI | GGATC | 2 cut(s) | 51, 64 |
| AjnI | CCWGG | 2 cut(s) | 52, 238 |
| AluBI | AGCT | 1 cut(s) | 185 |
| AluI | AGCT | 1 cut(s) | 185 |
| AlwI | GGATC | 2 cut(s) | 51, 64 |
| ApeKI | GCWGC | 2 cut(s) | 101, 104 |
| AspLEI | GCGC | 1 cut(s) | 155 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 276 |
| BamHI | GGATCC | 1 cut(s) | 56 |
| BbvI | GCAGC | 2 cut(s) | 88, 116 |
| BccI | CCATC | 1 cut(s) | 176 |
| BciT130I | CCWGG | 2 cut(s) | 54, 240 |
| BfaI | CTAG | 1 cut(s) | 301 |
| BfmI | CTRYAG | 1 cut(s) | 102 |
| BisI | GCNGC | 2 cut(s) | 102, 105 |
| BlsI | GCNGC | 2 cut(s) | 103, 106 |
| Bme1390I | CCNGG | 2 cut(s) | 54, 240 |
| BmiI | GGNNCC | 1 cut(s) | 58 |
| BmrFI | CCNGG | 2 cut(s) | 54, 240 |
| BmsI | GCATC | 1 cut(s) | 140 |
| BpuEI | CTTGAG | 1 cut(s) | 161 |
| BseBI | CCWGG | 2 cut(s) | 54, 240 |
| BseGI | GGATG | 2 cut(s) | 28, 155 |
| BseXI | GCAGC | 2 cut(s) | 88, 116 |
| Bsp143I | GATC | 1 cut(s) | 56 |
| BspLI | GGNNCC | 1 cut(s) | 58 |
| BspMAI | CTGCAG | 1 cut(s) | 106 |
| BspPI | GGATC | 2 cut(s) | 51, 64 |
| BssMI | GATC | 1 cut(s) | 56 |
| Bst2UI | CCWGG | 2 cut(s) | 54, 240 |
| Bst4CI | ACNGT | 3 cut(s) | 89, 219, 289 |
| BstF5I | GGATG | 2 cut(s) | 28, 155 |
| BstHHI | GCGC | 1 cut(s) | 155 |
| BstKTI | GATC | 1 cut(s) | 59 |
| BstMBI | GATC | 1 cut(s) | 56 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 152 |
| BstNI | CCWGG | 2 cut(s) | 54, 240 |
| BstSCI | CCNGG | 2 cut(s) | 52, 238 |
| BstSFI | CTRYAG | 1 cut(s) | 102 |
| BstV1I | GCAGC | 2 cut(s) | 88, 116 |
| BstX2I | RGATCY | 1 cut(s) | 56 |
| BstYI | RGATCY | 1 cut(s) | 56 |
| BtsCI | GGATG | 2 cut(s) | 28, 155 |
| CfoI | GCGC | 1 cut(s) | 155 |
| CviJI | RGCY | 1 cut(s) | 185 |
| CviKI_1 | RGCY | 1 cut(s) | 185 |
| DpnI | GATC | 1 cut(s) | 58 |
| DpnII | GATC | 1 cut(s) | 56 |
| EcoRII | CCWGG | 2 cut(s) | 52, 238 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaiI | YATR | 5 cut(s) | 33, 72, 121, 235, 281 |
| Fnu4HI | GCNGC | 2 cut(s) | 102, 105 |
| FokI | GGATG | 2 cut(s) | 35, 162 |
| Fsp4HI | GCNGC | 2 cut(s) | 102, 105 |
| FspBI | CTAG | 1 cut(s) | 301 |
| FspI | TGCGCA | 1 cut(s) | 154 |
| GlaI | GCGC | 1 cut(s) | 154 |
| GluI | GCNGC | 2 cut(s) | 102, 105 |
| HhaI | GCGC | 1 cut(s) | 155 |
| Hin6I | GCGC | 1 cut(s) | 153 |
| HinP1I | GCGC | 1 cut(s) | 153 |
| Hpy166II | GTNNAC | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 1 cut(s) | 205 |
| Hpy188III | TCNNGA | 1 cut(s) | 178 |
| Hpy8I | GTNNAC | 1 cut(s) | 76 |
| HpyCH4III | ACNGT | 3 cut(s) | 89, 219, 289 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 104 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 152 |
| HspAI | GCGC | 1 cut(s) | 153 |
| Kzo9I | GATC | 1 cut(s) | 56 |
| LpnPI | CCDG | 7 cut(s) | 25, 39, 66, 132, 171, 225, 252 |
| Lsp1109I | GCAGC | 2 cut(s) | 88, 116 |
| LweI | GCATC | 1 cut(s) | 140 |
| MaeI | CTAG | 1 cut(s) | 301 |
| MaeIII | GTNAC | 2 cut(s) | 229, 283 |
| MalI | GATC | 1 cut(s) | 58 |
| MboI | GATC | 1 cut(s) | 56 |
| MflI | RGATCY | 1 cut(s) | 56 |
| MluCI | AATT | 4 cut(s) | 40, 67, 206, 256 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 1 cut(s) | 269 |
| MspR9I | CCNGG | 2 cut(s) | 54, 240 |
| MvaI | CCWGG | 2 cut(s) | 54, 240 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 152 |
| NdeII | GATC | 1 cut(s) | 56 |
| NlaIV | GGNNCC | 1 cut(s) | 58 |
| NsbI | TGCGCA | 1 cut(s) | 154 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PfoI | TCCNGGA | 1 cut(s) | 52 |
| PkrI | GCNGC | 2 cut(s) | 103, 106 |
| Psp6I | CCWGG | 2 cut(s) | 52, 238 |
| PspGI | CCWGG | 2 cut(s) | 52, 238 |
| PspN4I | GGNNCC | 1 cut(s) | 58 |
| PstI | CTGCAG | 1 cut(s) | 106 |
| PsuI | RGATCY | 1 cut(s) | 56 |
| SaqAI | TTAA | 1 cut(s) | 269 |
| SatI | GCNGC | 2 cut(s) | 102, 105 |
| Sau3AI | GATC | 1 cut(s) | 56 |
| ScrFI | CCNGG | 2 cut(s) | 54, 240 |
| SetI | ASST | 2 cut(s) | 187, 244 |
| SfaNI | GCATC | 1 cut(s) | 140 |
| SfcI | CTRYAG | 1 cut(s) | 102 |
| SmlI | CTYRAG | 1 cut(s) | 176 |
| SmoI | CTYRAG | 1 cut(s) | 176 |
| Sse9I | AATT | 4 cut(s) | 40, 67, 206, 256 |
| SspMI | CTAG | 1 cut(s) | 301 |
| StyD4I | CCNGG | 2 cut(s) | 52, 238 |
| TaaI | ACNGT | 3 cut(s) | 89, 219, 289 |
| TasI | AATT | 4 cut(s) | 40, 67, 206, 256 |
| Tru1I | TTAA | 1 cut(s) | 269 |
| Tru9I | TTAA | 1 cut(s) | 269 |
| TseI | GCWGC | 2 cut(s) | 101, 104 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 246 |
| XspI | CTAG | 1 cut(s) | 301 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |