Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0022433

Physical Location & Seq

Genomic Coordinates Forward (+)

6039732 .. 6042677

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTTACAGGGGAAAAATGAAATTGTTTGTCCTAATATCTCTGGTAAGAGCGGGTTAGAAAAGATGGGTGCTCTAGACATACAGAGAGTGGTTCATCGACACCAGGGATGGCGGCTGATCTCATGTATGTGGTTACATGCTGGAGTTTTCCACGTGCTTGCCAATATGCTGAGTCTTGTATTCATTGGAATTCGGCTTGAGCAAGAATTCTGGATTTTTATTCGAATTGGTTTCCTATATCTTATGTCTGGTTTTGGTGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCAGGTGCGCTTTTTGGTTTACTCGGAAGCATGCTTTCAGAGCTCATATCAAATTGGACAATGTATGTAAATAAGTTCTATCCGCAGTTAGCAGCATTGCTTACTCTCTTTTTCATCATCATAATAAACTTAGCAGTGGGAATTCTACCACACGTGGACAACTTTGCTCATATTGGCGGATTTGTCTCCGGATTTCTTCTTGGATTTTTTATTTTTTATTTTTTGATCCGCCCCCAGTTTAAATGGCTTACCCAACGGAATGCTCCCCCTGGACGTGTTACTACTCCAGTTAAATCGAAACACAAGACGTATCAATATGTCTCATGGGTCCTCTCTTTGATACTATTAATTGTTGGGTATACTCTTGGCCTGGTTACTTTTTTTCGAGGGGTCAATCTAAACAATCACTGTTCCTGGTGTCATTATTTGAGCTATGTCCCTATGTCAAAATGGAATTGCAAGTCACAAAAAATTTATTGTCTGCCCCTCCTGGACTCAGCAGCTATGTGCTGGGCTTTGCAGTTGACCATACATGTACAAATTTCAGATTTGAATATTTCAGAATACTTCTTTGTCTGTTATGTTGGAGAATACTTATTTGTCTGTTATGTTGCAGAATACTTAACATTTGATAAAAAAACCATAATGATGCACCTCTTTATAGTATGTGCACGACCCCTTGATCTTATAGTTTCAGGTTTCTATCCGCAGTTAGCAGCATTGCTTACTCTCCTTTTCACCATCATAATAAACTCAGCAGTGGAATTCTACCACATGTGGACAACTTTGCTCATATTGGAGGATTTGTCTCTGGATTTCTTCTTGGATTTTTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

383

Amino Acids

43.67

Weight (kDa)

8.42

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	34 - 176	2.8e-36	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022433)

Species	Orthologous Gene IDs
malus_domestica	MD11G1103900.v1.1 MD11G1105300.v1.1 MD11G1106500.v1.1
pyrus_communis	pycom11g07880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	668
AccIII	TCCGGA	1 cut(s)	497
AciI	CCGC	6 cut(s)	51, 112, 392, 486, 538, 1016
AclWI	GGATC	1 cut(s)	529
AcsI	RAATTY	6 cut(s)	189, 206, 450, 780, 849, 1073
AcuI	CTGAAG	1 cut(s)	294
AcvI	CACGTG	2 cut(s)	154, 463
AfaI	GTAC	1 cut(s)	846
AflIII	ACRYGT	4 cut(s)	460, 583, 841, 1083
AgsI	TTSAA	2 cut(s)	287, 862
AjiI	CACGTC	1 cut(s)	584
AjnI	CCWGG	5 cut(s)	102, 577, 678, 722, 798
AluBI	AGCT	4 cut(s)	275, 352, 741, 812
AluI	AGCT	4 cut(s)	275, 352, 741, 812
Alw21I	GWGCWC	3 cut(s)	73, 354, 982
Alw26I	GTCTC	3 cut(s)	499, 634, 1122
Alw44I	GTGCAC	1 cut(s)	978
AlwI	GGATC	1 cut(s)	529
Aor13HI	TCCGGA	1 cut(s)	497
AoxI	GGCC	1 cut(s)	676
ApaLI	GTGCAC	1 cut(s)	978
ApeKI	GCWGC	3 cut(s)	401, 809, 1025
ApoI	RAATTY	6 cut(s)	189, 206, 450, 780, 849, 1073
AseI	ATTAAT	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	637
AsuHPI	GGTGA	1 cut(s)	1039
AsuII	TTCGAA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	982
BanII	GRGCYC	1 cut(s)	354
BbrPI	CACGTG	2 cut(s)	154, 463
Bbv12I	GWGCWC	3 cut(s)	73, 354, 982
BbvI	GCAGC	3 cut(s)	413, 821, 1037
BccI	CCATC	3 cut(s)	58, 102, 1058
BciT130I	CCWGG	5 cut(s)	104, 579, 680, 724, 800
BcoDI	GTCTC	3 cut(s)	499, 634, 1122
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	4 cut(s)	113, 402, 810, 1026
BlsI	GCNGC	4 cut(s)	114, 403, 811, 1027
Bme1390I	CCNGG	5 cut(s)	104, 579, 680, 724, 800
Bme18I	GGWCC	1 cut(s)	637
BmgBI	CACGTC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	637
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	5 cut(s)	104, 579, 680, 724, 800
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	948
BmuI	ACTGGG	1 cut(s)	538
BpmI	CTGGAG	2 cut(s)	162, 579
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	218
BsaAI	YACGTR	2 cut(s)	154, 463
BsaJI	CCNNGG	2 cut(s)	103, 577
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	2 cut(s)	1100, 1130
Bse1I	ACTGG	2 cut(s)	544, 596
Bse3DI	GCAATG	2 cut(s)	404, 1028
BseAI	TCCGGA	1 cut(s)	497
BseBI	CCWGG	5 cut(s)	104, 579, 680, 724, 800
BseDI	CCNNGG	2 cut(s)	103, 577
BseGI	GGATG	1 cut(s)	113
BseMI	GCAATG	2 cut(s)	404, 1028
BseMII	CTCAG	3 cut(s)	161, 819, 1077
BseNI	ACTGG	2 cut(s)	544, 596
BseSI	GKGCMC	1 cut(s)	982
BseXI	GCAGC	3 cut(s)	413, 821, 1037
BseYI	CCCAGC	1 cut(s)	819
BshFI	GGCC	1 cut(s)	678
BsiHKAI	GWGCWC	3 cut(s)	73, 354, 982
BsiSI	CCGG	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	731
BsmAI	GTCTC	3 cut(s)	499, 634, 1122
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	678
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	73, 354, 982
Bsp13I	TCCGGA	1 cut(s)	497
Bsp1407I	TGTACA	1 cut(s)	844
Bsp143I	GATC	3 cut(s)	117, 534, 991
BspACI	CCGC	6 cut(s)	51, 112, 392, 486, 538, 1016
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	3 cut(s)	162, 818, 1076
BspEI	TCCGGA	1 cut(s)	497
BspLI	GGNNCC	1 cut(s)	638
BspPI	GGATC	1 cut(s)	529
BspT104I	TTCGAA	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	51
BsrDI	GCAATG	2 cut(s)	404, 1028
BsrGI	TGTACA	1 cut(s)	844
BsrI	ACTGG	2 cut(s)	544, 596
BssECI	CCNNGG	2 cut(s)	103, 577
BssMI	GATC	3 cut(s)	117, 534, 991
BssNAI	GTATAC	1 cut(s)	669
Bst1107I	GTATAC	1 cut(s)	669
Bst2UI	CCWGG	5 cut(s)	104, 579, 680, 724, 800
Bst4CI	ACNGT	1 cut(s)	719
BstAUI	TGTACA	1 cut(s)	844
BstBAI	YACGTR	2 cut(s)	154, 463
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	159, 341
BstDEI	CTNAG	4 cut(s)	170, 439, 805, 1063
BstF5I	GGATG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	3 cut(s)	120, 537, 994
BstMAI	GTCTC	3 cut(s)	499, 634, 1122
BstMBI	GATC	3 cut(s)	117, 534, 991
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 349
BstNI	CCWGG	5 cut(s)	104, 579, 680, 724, 800
BstNSI	RCATGY	4 cut(s)	140, 343, 845, 1087
BstSCI	CCNGG	5 cut(s)	102, 577, 678, 722, 798
BstSLI	GKGCMC	1 cut(s)	982
BstV1I	GCAGC	3 cut(s)	413, 821, 1037
BstZ17I	GTATAC	1 cut(s)	669
BsuRI	GGCC	1 cut(s)	678
BtrI	CACGTC	1 cut(s)	584
BtsCI	GGATG	1 cut(s)	113
BtsI	GCAGTG	2 cut(s)	450, 1074
BtsIMutI	CAGTG	3 cut(s)	450, 715, 1074
Cac8I	GCNNGC	2 cut(s)	159, 341
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	845
CviAII	CATG	6 cut(s)	123, 137, 340, 633, 842, 1084
CviJI	RGCY	9 cut(s)	115, 196, 275, 352, 556, 678, 741, 812, 824
CviKI_1	RGCY	9 cut(s)	115, 196, 275, 352, 556, 678, 741, 812, 824
CviQI	GTAC	1 cut(s)	845
DdeI	CTNAG	4 cut(s)	170, 439, 805, 1063
DpnI	GATC	3 cut(s)	119, 536, 993
DpnII	GATC	3 cut(s)	117, 534, 991
DraI	TTTAAA	1 cut(s)	550
EciI	GGCGGA	2 cut(s)	501, 527
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	637
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	294
Eco72I	CACGTG	2 cut(s)	154, 463
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRI	GAATTC	4 cut(s)	189, 206, 450, 1073
EcoRII	CCWGG	5 cut(s)	102, 577, 678, 722, 798
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	6 cut(s)	126, 140, 343, 636, 845, 1087
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	6 cut(s)	122, 136, 339, 632, 841, 1083
FauI	CCCGC	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	4 cut(s)	113, 402, 810, 1026
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	4 cut(s)	113, 402, 810, 1026
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	4 cut(s)	113, 402, 810, 1026
GsaI	CCCAGC	1 cut(s)	823
GsuI	CTGGAG	2 cut(s)	162, 579
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	498
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	6 cut(s)	126, 140, 343, 636, 845, 1087
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HinfI	GANTC	2 cut(s)	172, 803
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	1 cut(s)	1039
Hpy166II	GTNNAC	6 cut(s)	329, 466, 669, 834, 980, 1089
Hpy188I	TCNGA	4 cut(s)	335, 349, 856, 871
Hpy188III	TCNNGA	4 cut(s)	74, 211, 498, 1121
Hpy8I	GTNNAC	6 cut(s)	329, 466, 669, 834, 980, 1089
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	4 cut(s)	153, 462, 583, 617
HpyCH4V	TGCA	5 cut(s)	768, 829, 923, 961, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 349
HpyF3I	CTNAG	4 cut(s)	170, 439, 805, 1063
HpySE526I	ACGT	4 cut(s)	153, 462, 583, 617
Hsp92II	CATG	6 cut(s)	126, 140, 343, 636, 845, 1087
HspAI	GCGC	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	497
Kzo9I	GATC	3 cut(s)	117, 534, 991
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	3 cut(s)	413, 821, 1037
LweI	GCATC	1 cut(s)	948
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	4 cut(s)	153, 462, 583, 617
MaeIII	GTNAC	5 cut(s)	3, 132, 586, 682, 771
MalI	GATC	3 cut(s)	119, 536, 993
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	3 cut(s)	117, 534, 991
MboII	GAAGA	2 cut(s)	497, 1120
MhlI	GDGCHC	3 cut(s)	73, 354, 982
MlyI	GAGTC	2 cut(s)	181, 797
MmeI	TCCRAC	1 cut(s)	874
MnlI	CCTC	5 cut(s)	650, 689, 806, 974, 1102
MroI	TCCGGA	1 cut(s)	497
MseI	TTAA	4 cut(s)	549, 600, 656, 932
MslI	CAYNNNNRTG	2 cut(s)	127, 956
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	5 cut(s)	104, 579, 680, 724, 800
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	5 cut(s)	104, 579, 680, 724, 800
MwoI	GCNNNNNNNGC	2 cut(s)	314, 349
NdeII	GATC	3 cut(s)	117, 534, 991
NlaIII	CATG	6 cut(s)	126, 140, 343, 636, 845, 1087
NlaIV	GGNNCC	1 cut(s)	638
NmuCI	GTSAC	1 cut(s)	771
NspI	RCATGY	4 cut(s)	140, 343, 845, 1087
NspV	TTCGAA	1 cut(s)	223
PaeI	GCATGC	1 cut(s)	343
PciI	ACATGT	2 cut(s)	841, 1083
PctI	GAATGC	1 cut(s)	574
PfoI	TCCNGGA	1 cut(s)	798
PkrI	GCNGC	4 cut(s)	114, 403, 811, 1027
PleI	GAGTC	2 cut(s)	180, 797
PmaCI	CACGTG	2 cut(s)	154, 463
PmlI	CACGTG	2 cut(s)	154, 463
PpsI	GAGTC	2 cut(s)	180, 797
Ppu21I	YACGTR	2 cut(s)	154, 463
PpuMI	RGGWCCY	1 cut(s)	637
PscI	ACATGT	2 cut(s)	841, 1083
PshBI	ATTAAT	1 cut(s)	656
Psp124BI	GAGCTC	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	5 cut(s)	102, 577, 678, 722, 798
PspCI	CACGTG	2 cut(s)	154, 463
PspFI	CCCAGC	1 cut(s)	819
PspGI	CCWGG	5 cut(s)	102, 577, 678, 722, 798
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	1 cut(s)	637
PspPPI	RGGWCCY	1 cut(s)	637
RsaI	GTAC	1 cut(s)	846
RsaNI	GTAC	1 cut(s)	845
RseI	CAYNNNNRTG	2 cut(s)	127, 956
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	549, 600, 656, 932
SatI	GCNGC	4 cut(s)	113, 402, 810, 1026
Sau3AI	GATC	3 cut(s)	117, 534, 991
Sau96I	GGNCC	1 cut(s)	637
SchI	GAGTC	2 cut(s)	181, 797
ScrFI	CCNGG	5 cut(s)	104, 579, 680, 724, 800
SduI	GDGCHC	3 cut(s)	73, 354, 982
SfaNI	GCATC	1 cut(s)	948
SfuI	TTCGAA	1 cut(s)	223
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	127, 956
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SphI	GCATGC	1 cut(s)	343
SsiI	CCGC	6 cut(s)	51, 112, 392, 486, 538, 1016
SspI	AATATT	1 cut(s)	865
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	5 cut(s)	102, 577, 678, 722, 798
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	4 cut(s)	156, 465, 586, 620
TaqI	TCGA	4 cut(s)	97, 223, 605, 694
TatI	WGTACW	1 cut(s)	844
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	4 cut(s)	549, 600, 656, 932
Tru9I	TTAA	4 cut(s)	549, 600, 656, 932
TscAI	CASTG	3 cut(s)	450, 722, 1074
TseFI	GTSAC	1 cut(s)	771
TseI	GCWGC	3 cut(s)	401, 809, 1025
Tsp45I	GTSAC	1 cut(s)	771
TspDTI	ATGAA	4 cut(s)	33, 83, 172, 412
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	3 cut(s)	450, 722, 1074
VneI	GTGCAC	1 cut(s)	978
VpaK11BI	GGWCC	1 cut(s)	637
VspI	ATTAAT	1 cut(s)	656
XapI	RAATTY	6 cut(s)	189, 206, 450, 780, 849, 1073
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	4 cut(s)	140, 343, 845, 1087
XmiI	GTMKAC	1 cut(s)	668
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.