pycom11g08480

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0022298
Physical Location & Seq
Reverse (-)
6590487 .. 6590886
400 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGAAGGGACCGTCGGCGCCGCGGCCTGAATTCGAGCCGAGTTCAGTCTGCTTGGCGAAGATGGTTCAGAATTTCATCGATGAAAGCAACGAGAAGCAGCCTCCGCCGAAATGTGGACGGAGCCGCTGCAATTGCTTTCACGGCAACAGCAATGACAGCTCCGACGACGAGCTCGATATATTCGGTGGAGATTTCGGTGATTCGATCGATCCTCCGGCTCGTTCGGTGGCTACGCCTCCGATATTCTTAAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

86

Amino Acids

9.26

Weight (kDa)

4.75

Isoelectric Point (pI)

66.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022298)

Species Orthologous Gene IDs
malus_domestica MD02G1260100.v1.1 MD07G1143500.v1.1 MD10G1021100.v1.1
pyrus_communis pycom11g08480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 16
AccII CGCG 1 cut(s) 22
AciI CCGC 4 cut(s) 20, 22, 104, 124
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 2 cut(s) 29, 70
AcyI GRCGYC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 113
AflII CTTAAG 1 cut(s) 247
AluBI AGCT 2 cut(s) 159, 172
AluI AGCT 2 cut(s) 159, 172
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 1 cut(s) 203
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 97, 126
ApoI RAATTY 2 cut(s) 29, 70
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 109, 113
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 20
BfrI CTTAAG 1 cut(s) 247
BisI GCNGC 5 cut(s) 20, 23, 98, 124, 127
BlsI GCNGC 5 cut(s) 21, 24, 99, 125, 128
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 3 cut(s) 9, 18, 122
Bsa29I ATCGAT 2 cut(s) 78, 207
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 157
BseCI ATCGAT 2 cut(s) 78, 207
BseDI CCNNGG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 157
BseXI GCAGC 2 cut(s) 109, 113
Bsh1236I CGCG 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 2 cut(s) 78, 207
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 204, 208
BspACI CCGC 4 cut(s) 20, 22, 104, 124
BspANI GGCC 1 cut(s) 25
BspDI ATCGAT 2 cut(s) 78, 207
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 9, 18, 122
BspPI GGATC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 2 cut(s) 204, 208
BssNI GRCGYC 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 17
BstAFI CTTAAG 1 cut(s) 247
BstDSI CCRYGG 1 cut(s) 20
BstFNI CGCG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 2 cut(s) 207, 211
BstMBI GATC 2 cut(s) 204, 208
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 4 cut(s) 103, 132, 141, 156
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 109, 113
Bsu15I ATCGAT 2 cut(s) 78, 207
BsuRI GGCC 1 cut(s) 25
BsuTUI ATCGAT 2 cut(s) 78, 207
BtgI CCRYGG 1 cut(s) 20
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 8
Cfr42I CCGCGG 1 cut(s) 23
ClaI ATCGAT 2 cut(s) 78, 207
CviJI RGCY 8 cut(s) 25, 37, 100, 123, 159, 172, 218, 230
CviKI_1 RGCY 8 cut(s) 25, 37, 100, 123, 159, 172, 218, 230
DinI GGCGCC 1 cut(s) 18
DpnI GATC 2 cut(s) 206, 210
DpnII GATC 2 cut(s) 204, 208
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 174
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
FaiI YATR 1 cut(s) 179
FaqI GGGAC 1 cut(s) 21
Fnu4HI GCNGC 5 cut(s) 20, 23, 98, 124, 127
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 5 cut(s) 20, 23, 98, 124, 127
GlaI GCGC 1 cut(s) 18
GluI GCNGC 5 cut(s) 20, 23, 98, 124, 127
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 215
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 2 cut(s) 200, 252
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 4 cut(s) 69, 163, 240, 257
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 3 cut(s) 16, 167, 170
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 132, 141, 156
Hsp92I GRCGYC 1 cut(s) 17
HspAI GCGC 1 cut(s) 17
KasI GGCGCC 1 cut(s) 16
KspI CCGCGG 1 cut(s) 23
Kzo9I GATC 2 cut(s) 204, 208
LmnI GCTCC 2 cut(s) 120, 164
LpnPI CCDG 2 cut(s) 39, 228
Lsp1109I GCAGC 2 cut(s) 109, 113
MalI GATC 2 cut(s) 206, 210
MboI GATC 2 cut(s) 204, 208
MboII GAAGA 1 cut(s) 70
MfeI CAATTG 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 3 cut(s) 29, 70, 130
Mly113I GGCGCC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 3 cut(s) 111, 222, 246
MseI TTAA 1 cut(s) 248
MspA1I CMGCKG 2 cut(s) 22, 126
MspCI CTTAAG 1 cut(s) 247
MspI CCGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 130
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 4 cut(s) 103, 132, 141, 156
NarI GGCGCC 1 cut(s) 17
NdeII GATC 2 cut(s) 204, 208
NlaIV GGNNCC 3 cut(s) 9, 18, 122
NmeAIII GCCGAG 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 5 cut(s) 21, 24, 99, 125, 128
Ple19I CGATCG 1 cut(s) 207
PluTI GGCGCC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 174
PspN4I GGNNCC 3 cut(s) 9, 18, 122
PspPI GGNCC 1 cut(s) 8
PvuI CGATCG 1 cut(s) 207
SacI GAGCTC 1 cut(s) 174
SacII CCGCGG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 5 cut(s) 20, 23, 98, 124, 127
Sau3AI GATC 2 cut(s) 204, 208
Sau96I GGNCC 1 cut(s) 8
SduI GDGCHC 1 cut(s) 174
SetI ASST 2 cut(s) 161, 174
SfoI GGCGCC 1 cut(s) 18
Sfr303I CCGCGG 1 cut(s) 23
SgrBI CCGCGG 1 cut(s) 23
SinI GGWCC 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 3 cut(s) 29, 70, 130
SsiI CCGC 4 cut(s) 20, 22, 104, 124
SspDI GGCGCC 1 cut(s) 16
SstI GAGCTC 1 cut(s) 174
TaaI ACNGT 1 cut(s) 12
TaqI TCGA 5 cut(s) 33, 78, 174, 203, 207
TasI AATT 3 cut(s) 29, 70, 130
TauI GCSGC 3 cut(s) 22, 25, 126
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseI GCWGC 2 cut(s) 97, 126
TspDTI ATGAA 3 cut(s) 17, 64, 96
TspGWI ACGGA 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 2 cut(s) 29, 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.