pycom11g08520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0029400
Physical Location & Seq
Forward (+)
6601576 .. 6601878
303 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08520.1

Sequence Viewer

Length: 303 bp
ATGTCTACATTGGAATCTCGTCTCTCTGCTGTGGAAACTGTTCTGGAAGCTCTTCCTCAGCAGCTCCAAGCAGCTTCGGATGCCAGATTCACTTCCTTAGAGATGAAATTCGGCCTGCTCTTGGAGCATCTCCATCGTGACCTTGGCGTTTCAGGCGGCGCTGGATCTTCTGCTGTTCCACCTCCTCCAGGTCCTGAGCAGCGGCATCCTCCTCCTGCTGACGTCGAGTTCCATTATTTAGAGACTCCACGTTTCCCGTGTCGAGACTCTTTCAATGGTGGCGGTTTCACTCCACGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.81

Weight (kDa)

5.44

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029400)

Species Orthologous Gene IDs
pyrus_communis pycom11g08520 pycom13g20820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccI GTMKAC 1 cut(s) 5
AciI CCGC 3 cut(s) 156, 202, 282
AclWI GGATC 1 cut(s) 172
AcsI RAATTY 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 121, 188
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 50, 64, 74
AluI AGCT 3 cut(s) 50, 64, 74
Alw26I GTCTC 3 cut(s) 26, 236, 258
AlwI GGATC 1 cut(s) 172
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 3 cut(s) 61, 71, 199
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 2 cut(s) 39, 51
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 73, 83, 211
BccI CCATC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 3 cut(s) 26, 236, 258
BfoI RGCGCY 1 cut(s) 162
BisI GCNGC 5 cut(s) 62, 72, 157, 200, 203
BlsI GCNGC 5 cut(s) 63, 73, 158, 201, 204
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 3 cut(s) 70, 136, 214
BpmI CTGGAG 1 cut(s) 171
Bpu10I CCTNAGC 2 cut(s) 57, 195
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 188
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 85, 205
BseLI CCNNNNNNNGG 2 cut(s) 121, 188
BseMII CTCAG 2 cut(s) 71, 186
BseRI GAGGAG 2 cut(s) 174, 201
BseXI GCAGC 3 cut(s) 73, 83, 211
BshFI GGCC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 121, 188
BsmAI GTCTC 3 cut(s) 26, 236, 258
BsmBI CGTCTC 1 cut(s) 26
BsnI GGCC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 164
BspACI CCGC 3 cut(s) 156, 202, 282
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 2 cut(s) 70, 187
BspPI GGATC 1 cut(s) 172
BspQI GCTCTTC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 164
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 4 cut(s) 57, 97, 195, 300
BstENI CCTNNNNNAGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 85, 205
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 167
BstMAI GTCTC 3 cut(s) 26, 236, 258
BstMBI GATC 1 cut(s) 164
BstMWI GCNNNNNNNGC 3 cut(s) 80, 124, 153
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 73, 83, 211
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 85, 205
Cac8I GCNNGC 1 cut(s) 116
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 191
CviJI RGCY 4 cut(s) 50, 64, 74, 114
CviKI_1 RGCY 4 cut(s) 50, 64, 74, 114
DdeI CTNAG 4 cut(s) 57, 97, 195, 300
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 26
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 62, 72, 157, 200, 203
FokI GGATG 2 cut(s) 92, 192
Fsp4HI GCNGC 5 cut(s) 62, 72, 157, 200, 203
GlaI GCGC 1 cut(s) 160
GluI GCNGC 5 cut(s) 62, 72, 157, 200, 203
GsuI CTGGAG 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 1 cut(s) 114
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 222
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 4 cut(s) 14, 87, 244, 266
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 4 cut(s) 44, 137, 194, 263
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 2 cut(s) 222, 250
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 124, 153
HpyF3I CTNAG 4 cut(s) 57, 97, 195, 300
HpySE526I ACGT 2 cut(s) 222, 250
Hsp92I GRCGYC 1 cut(s) 222
HspAI GCGC 1 cut(s) 159
Kzo9I GATC 1 cut(s) 164
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 2 cut(s) 69, 124
LpnPI CCDG 9 cut(s) 29, 97, 128, 138, 147, 174, 201, 207, 228
Lsp1109I GCAGC 3 cut(s) 73, 83, 211
LweI GCATC 3 cut(s) 70, 136, 214
MaeII ACGT 2 cut(s) 222, 250
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 2 cut(s) 44, 159
MflI RGATCY 1 cut(s) 164
MluCI AATT 1 cut(s) 107
MlyI GAGTC 2 cut(s) 238, 260
MnlI CCTC 5 cut(s) 66, 192, 195, 219, 222
MroXI GAANNNNTTC 2 cut(s) 39, 51
MspA1I CMGCKG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 80, 124, 153
NdeII GATC 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 39, 51
PfeI GAWTC 2 cut(s) 14, 87
PkrI GCNGC 5 cut(s) 63, 73, 158, 201, 204
PleI GAGTC 2 cut(s) 238, 260
PpsI GAGTC 2 cut(s) 238, 260
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspPI GGNCC 1 cut(s) 191
PspPPI RGGWCCY 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 57
SatI GCNGC 5 cut(s) 62, 72, 157, 200, 203
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 238, 260
ScrFI CCNGG 1 cut(s) 189
SetI ASST 8 cut(s) 52, 66, 76, 144, 184, 193, 225, 253
SfaNI GCATC 3 cut(s) 70, 136, 214
SinI GGWCC 1 cut(s) 191
Sse9I AATT 1 cut(s) 107
SsiI CCGC 3 cut(s) 156, 202, 282
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 2 cut(s) 225, 253
TaqI TCGA 2 cut(s) 225, 262
TasI AATT 1 cut(s) 107
TauI GCSGC 2 cut(s) 159, 205
TfiI GAWTC 2 cut(s) 14, 87
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 3 cut(s) 61, 71, 199
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 186
XapI RAATTY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 39, 51
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.