Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0029403

Physical Location & Seq

Genomic Coordinates Forward (+)

9946574 .. 9947465

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCACGGCAGTATGTTCGAAGCGTAATTTCATCTGTGCAGAGAGTCGCGATGGCTATATCTCCATCTGGATTGAGTCCGTCCGTAGGACCAAAACTATCTCCCGGCTCACCTGAAGCTCAAACACTGGCTCACTGGATCTGCCAGAGTTACAGTTATCATGTTGGGGGTGAATTACTGAGACATGATTCCTTGGGCGGTGACTCGATGTTGAAACATTTATGGCATCACCAAGATGCCATTTTGTGTTGTTCATTGAAGTCAATGCCGGTTTTCATCTTTGCAAACCAGGCAGGACTTGACATGCTGGAGACATCATTAGTTGCCCTTCAGGACATCTCATTGGACAAGATTTTCGATGAGTCCGGACGCAAGACGTTGTGTGCAGACTTTGCTAAGCTAATGAACCAGGGGTTTGCATACTTGCCGGCTGGCATCTGCATGTCGACGATGGGACGCCACATATCGTACGAGCAAGCGATTGCATGGAAAGTAGTTGCAGCAGAAGAGAACTCTGTCCATTGCCTTGCCTTCTGCTTCATAAACTGGTCTTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

187

Amino Acids

20.44

Weight (kDa)

6.42

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029403)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g11340
rosa_multiflora	Rmu_co8484171.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	446
AccII	CGCG	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	365
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	146
AcuI	CTGAAG	2 cut(s)	135, 314
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	214, 259
AjnI	CCWGG	2 cut(s)	288, 408
AluBI	AGCT	2 cut(s)	119, 400
AluI	AGCT	2 cut(s)	119, 400
Alw26I	GTCTC	2 cut(s)	175, 305
AlwI	GGATC	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	500
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	4 cut(s)	102, 182, 212, 221
AsuII	TTCGAA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	3 cut(s)	46, 73, 445
BceAI	ACGGC	1 cut(s)	23
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	290, 410
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	175, 305
BisI	GCNGC	1 cut(s)	501
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	3 cut(s)	105, 290, 410
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmrFI	CCNGG	3 cut(s)	105, 290, 410
BmsI	GCATC	3 cut(s)	226, 235, 444
BpmI	CTGGAG	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	192, 409
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	2 cut(s)	268, 427
Bse1I	ACTGG	3 cut(s)	132, 140, 551
Bse3DI	GCAATG	1 cut(s)	520
BseAI	TCCGGA	1 cut(s)	365
BseBI	CCWGG	2 cut(s)	290, 410
BseDI	CCNNGG	2 cut(s)	192, 409
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	132, 140, 551
BseXI	GCAGC	1 cut(s)	512
BsgI	GTGCAG	2 cut(s)	59, 405
Bsh1236I	CGCG	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	105, 269, 366, 428
BsiWI	CGTACG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	2 cut(s)	175, 305
BsmFI	GGGAC	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	19
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	138
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp68I	TCGCGA	1 cut(s)	50
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	365
BspFNI	CGCG	1 cut(s)	50
BspPI	GGATC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	520
BsrFI	RCCGGY	2 cut(s)	268, 427
BsrI	ACTGG	3 cut(s)	132, 140, 551
BssAI	RCCGGY	2 cut(s)	268, 427
BssECI	CCNNGG	2 cut(s)	192, 409
BssMI	GATC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	290, 410
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	501
BstACI	GRCGYC	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	429, 433, 477
BstDEI	CTNAG	2 cut(s)	179, 396
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	175, 305
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 392
BstNI	CCWGG	2 cut(s)	290, 410
BstNSI	RCATGY	2 cut(s)	307, 445
BstSCI	CCNGG	3 cut(s)	103, 288, 408
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	125, 133
BtuMI	TCGCGA	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	429, 433, 477
Cfr10I	RCCGGY	2 cut(s)	268, 427
Cfr13I	GGNCC	1 cut(s)	89
CseI	GACGC	2 cut(s)	378, 465
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	5 cut(s)	161, 185, 304, 442, 486
CviJI	RGCY	6 cut(s)	56, 108, 119, 131, 400, 431
CviKI_1	RGCY	6 cut(s)	56, 108, 119, 131, 400, 431
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	179, 396
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	2 cut(s)	135, 314
EcoRII	CCWGG	2 cut(s)	288, 408
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	5 cut(s)	164, 188, 307, 445, 489
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	5 cut(s)	160, 184, 303, 441, 485
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	501
GluI	GCNGC	1 cut(s)	501
GsuI	CTGGAG	1 cut(s)	329
HapII	CCGG	4 cut(s)	105, 269, 366, 428
HgaI	GACGC	2 cut(s)	378, 465
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	5 cut(s)	164, 188, 307, 445, 489
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	5 cut(s)	45, 76, 188, 203, 362
HpaII	CCGG	4 cut(s)	105, 269, 366, 428
HphI	GGTGA	4 cut(s)	102, 182, 212, 221
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188III	TCNNGA	4 cut(s)	49, 69, 332, 366
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	2 cut(s)	338, 541
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	7 cut(s)	40, 284, 386, 419, 441, 485, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 392
HpyF3I	CTNAG	2 cut(s)	179, 396
HpySE526I	ACGT	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	5 cut(s)	164, 188, 307, 445, 489
Kpn2I	TCCGGA	1 cut(s)	365
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	138
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	3 cut(s)	226, 235, 444
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	149, 200
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	518
MflI	RGATCY	1 cut(s)	138
MluCI	AATT	2 cut(s)	27, 173
MlyI	GAGTC	4 cut(s)	54, 85, 197, 371
MroI	TCCGGA	1 cut(s)	365
MroNI	GCCGGC	1 cut(s)	427
MslI	CAYNNNNRTG	2 cut(s)	234, 440
MspI	CCGG	4 cut(s)	105, 269, 366, 428
MspR9I	CCNGG	3 cut(s)	105, 290, 410
MvaI	CCWGG	2 cut(s)	290, 410
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	290, 392
NaeI	GCCGGC	1 cut(s)	429
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	138
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	5 cut(s)	164, 188, 307, 445, 489
NmuCI	GTSAC	1 cut(s)	200
NruI	TCGCGA	1 cut(s)	50
NspI	RCATGY	2 cut(s)	307, 445
NspV	TTCGAA	1 cut(s)	19
PdiI	GCCGGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	188
Pfl23II	CGTACG	1 cut(s)	468
PkrI	GCNGC	1 cut(s)	502
PleI	GAGTC	4 cut(s)	53, 84, 197, 370
PpsI	GAGTC	4 cut(s)	53, 84, 197, 370
Psp6I	CCWGG	2 cut(s)	288, 408
PspGI	CCWGG	2 cut(s)	288, 408
PspLI	CGTACG	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	138
RruI	TCGCGA	1 cut(s)	50
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	2 cut(s)	234, 440
SalI	GTCGAC	1 cut(s)	445
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	4 cut(s)	54, 85, 197, 371
ScrFI	CCNGG	3 cut(s)	105, 290, 410
SetI	ASST	4 cut(s)	115, 121, 380, 402
SfaNI	GCATC	3 cut(s)	226, 235, 444
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	234, 440
Sse9I	AATT	2 cut(s)	27, 173
SsiI	CCGC	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	103, 288, 408
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	4 cut(s)	19, 206, 357, 446
TasI	AATT	2 cut(s)	27, 173
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	2 cut(s)	132, 140
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	5 cut(s)	21, 243, 265, 419, 529
TspGWI	ACGGA	2 cut(s)	69, 73
TspRI	CASTG	2 cut(s)	132, 140
VpaK11BI	GGWCC	1 cut(s)	89
XceI	RCATGY	2 cut(s)	307, 445
XmiI	GTMKAC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.