Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8484171.1

Orthogroup ID

OG0029403

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1918

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8484171.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ttgctagaagttgttcgtcttgaaggccattctttctctcaagaagaagcatttgcatcacgggacattcatctcttacagatatgtagtggagttgatgagaatgctgtgggagcctgttcggagcttgtttttgctccaattgatgagatgtttccagacgatgctccgttgcttccctctggtttccgcattattcctttggaatcaaaaacaagtgattcaaatgacgccatggctactcatcggactttagatctgacgtccagtcttgaagtgggctcaacaacaaaccataatgctggagatttgaattcatttcataacgctcgatcggtattaacgattgccttccagtttcccttcgagaatagtctacaggataatgttgcatccatggcacgccaatatgtacgaaatgtcatctcatcagtgcagagagttgcaatggctatatctccatcaggattgagtccgtcggtgggaccaaaattatctcccagctcaccagaagcactaacactggctaactggatctgccagagctatagttatcatataggggcggaactgctgcagcctgattccttggttggtgactcaatgttgaaacatctatggcatcatcaagatgcgattttgtgctgttcattgaagtcactgccggttttcatctttgctaaccaggcagggcttgacatgctggagacaactcttgttgctcttcaggacatctcattagataagatttttgatgagtgtggacgtaagacattgtgcgccgactttgcaaaactaatgcagcagggatttgcttacttgccagctgggatttgcatgtcaacaatggggcgccatatctcatatgaacaggccattggatggaaagttctttctggagaagataactctgtccattgccttgccttctcgtttgtaaactggtctttcgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

318

Amino Acids

34.75

Weight (kDa)

4.88

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029403)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g11340
rosa_multiflora	Rmu_co8484171.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	852
AccB7I	CCANNNNNTGG	1 cut(s)	882
AccI	GTMKAC	1 cut(s)	376
AciI	CCGC	2 cut(s)	190, 566
AclWI	GGATC	1 cut(s)	542
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	710
AcyI	GRCGYC	3 cut(s)	231, 263, 853
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	482, 882
AgsI	TTSAA	6 cut(s)	23, 225, 275, 313, 610, 655
AhdI	GACNNNNNGTC	1 cut(s)	267
AjnI	CCWGG	1 cut(s)	684
AjuI	GAANNNNNNNTTGG	2 cut(s)	861, 893
AloI	GAACNNNNNNTCC	2 cut(s)	873, 905
AluBI	AGCT	4 cut(s)	127, 504, 546, 827
AluI	AGCT	4 cut(s)	127, 504, 546, 827
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	1 cut(s)	542
AoxI	GGCC	2 cut(s)	25, 873
ApeKI	GCWGC	3 cut(s)	574, 577, 802
ApoI	RAATTY	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	782, 855
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	498, 608
AvaII	GGWCC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	852
BanII	GRGCYC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	561, 589, 814
BccI	CCATC	2 cut(s)	469, 876
BciT130I	CCWGG	1 cut(s)	686
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	3 cut(s)	377, 547, 575
BfoI	RGCGCY	1 cut(s)	856
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	3 cut(s)	575, 578, 803
BlsI	GCNGC	3 cut(s)	576, 579, 804
Bme1390I	CCNGG	1 cut(s)	686
Bme18I	GGWCC	1 cut(s)	485
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	3 cut(s)	115, 486, 854
BmrFI	CCNGG	1 cut(s)	686
BmsI	GCATC	5 cut(s)	65, 154, 401, 622, 631
BpmI	CTGGAG	3 cut(s)	324, 725, 918
BpuEI	CTTGAG	1 cut(s)	24
BsaHI	GRCGYC	3 cut(s)	231, 263, 853
BsaJI	CCNNGG	3 cut(s)	234, 396, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 882
Bse118I	RCCGGY	1 cut(s)	664
Bse1I	ACTGG	5 cut(s)	267, 355, 528, 536, 947
Bse3DI	GCAATG	2 cut(s)	453, 916
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	3 cut(s)	234, 396, 588
BseGI	GGATG	2 cut(s)	392, 887
BseLI	CCNNNNNNNGG	2 cut(s)	482, 882
BseMI	GCAATG	2 cut(s)	453, 916
BseNI	ACTGG	5 cut(s)	267, 355, 528, 536, 947
BseXI	GCAGC	3 cut(s)	561, 589, 814
BseYI	CCCAGC	2 cut(s)	500, 827
BsgI	GTGCAG	1 cut(s)	455
Bsh1285I	CGRYCG	1 cut(s)	335
BshFI	GGCC	2 cut(s)	27, 875
BshNI	GGYRCC	1 cut(s)	852
BsiEI	CGRYCG	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	665
BslFI	GGGAC	2 cut(s)	77, 498
BslI	CCNNNNNNNGG	2 cut(s)	482, 882
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	2 cut(s)	77, 498
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	27, 875
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	256, 332, 534
Bsp19I	CCATGG	2 cut(s)	234, 396
BspACI	CCGC	2 cut(s)	190, 566
BspANI	GGCC	2 cut(s)	27, 875
BspLI	GGNNCC	3 cut(s)	115, 486, 854
BspMAI	CTGCAG	1 cut(s)	579
BspPI	GGATC	1 cut(s)	542
BspQI	GCTCTTC	1 cut(s)	729
BspT107I	GGYRCC	1 cut(s)	852
BsrDI	GCAATG	2 cut(s)	453, 916
BsrFI	RCCGGY	1 cut(s)	664
BsrI	ACTGG	5 cut(s)	267, 355, 528, 536, 947
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	3 cut(s)	234, 396, 588
BssMI	GATC	3 cut(s)	256, 332, 534
BssNI	GRCGYC	3 cut(s)	231, 263, 853
BssT1I	CCWWGG	3 cut(s)	234, 396, 588
Bst2UI	CCWGG	1 cut(s)	686
Bst6I	CTCTTC	1 cut(s)	729
BstACI	GRCGYC	3 cut(s)	231, 263, 853
BstC8I	GCNNGC	2 cut(s)	403, 825
BstDSI	CCRYGG	2 cut(s)	234, 396
BstF5I	GGATG	2 cut(s)	392, 887
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	2 cut(s)	782, 855
BstKTI	GATC	3 cut(s)	259, 335, 537
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	3 cut(s)	256, 332, 534
BstMCI	CGRYCG	1 cut(s)	335
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 398, 686, 700, 788
BstNI	CCWGG	1 cut(s)	686
BstNSI	RCATGY	2 cut(s)	703, 841
BstSCI	CCNGG	1 cut(s)	684
BstSFI	CTRYAG	3 cut(s)	377, 547, 575
BstV1I	GCAGC	3 cut(s)	561, 589, 814
BstX2I	RGATCY	2 cut(s)	256, 534
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	2 cut(s)	256, 534
BsuRI	GGCC	2 cut(s)	27, 875
BtgI	CCRYGG	2 cut(s)	234, 396
BtsCI	GGATG	2 cut(s)	392, 887
BtsI	GCAGTG	1 cut(s)	659
BtsIMutI	CAGTG	3 cut(s)	438, 521, 659
Cac8I	GCNNGC	2 cut(s)	403, 825
CfoI	GCGC	2 cut(s)	782, 855
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	485
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	4 cut(s)	235, 397, 700, 838
CviQI	GTAC	1 cut(s)	413
DinI	GGCGCC	1 cut(s)	854
DpnI	GATC	3 cut(s)	258, 334, 536
DpnII	GATC	3 cut(s)	256, 332, 534
DriI	GACNNNNNGTC	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	729
Eam1105I	GACNNNNNGTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	729
EciI	GGCGGA	1 cut(s)	581
Eco130I	CCWWGG	3 cut(s)	234, 396, 588
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	710
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	684
EcoT14I	CCWWGG	3 cut(s)	234, 396, 588
EcoT38I	GRGCYC	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	854
EheI	GGCGCC	1 cut(s)	854
ErhI	CCWWGG	3 cut(s)	234, 396, 588
FaeI	CATG	4 cut(s)	238, 400, 703, 841
FaqI	GGGAC	2 cut(s)	77, 498
FatI	CATG	4 cut(s)	234, 396, 699, 837
FauNDI	CATATG	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	575, 578, 803
FokI	GGATG	2 cut(s)	379, 894
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	575, 578, 803
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	2 cut(s)	781, 854
GluI	GCNGC	3 cut(s)	575, 578, 803
GsaI	CCCAGC	2 cut(s)	504, 831
GsuI	CTGGAG	3 cut(s)	324, 725, 918
HaeII	RGCGCY	1 cut(s)	856
HaeIII	GGCC	2 cut(s)	27, 875
HapII	CCGG	1 cut(s)	665
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	2 cut(s)	782, 855
Hin1I	GRCGYC	3 cut(s)	231, 263, 853
Hin1II	CATG	4 cut(s)	238, 400, 703, 841
Hin6I	GCGC	2 cut(s)	780, 853
HinP1I	GCGC	2 cut(s)	780, 853
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HinfI	GANTC	5 cut(s)	206, 221, 472, 584, 599
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	2 cut(s)	498, 608
Hpy166II	GTNNAC	4 cut(s)	377, 764, 843, 940
Hpy188I	TCNGA	3 cut(s)	124, 249, 261
Hpy188III	TCNNGA	9 cut(s)	20, 41, 158, 272, 367, 465, 629, 728, 897
Hpy8I	GTNNAC	4 cut(s)	377, 764, 843, 940
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	4 cut(s)	17, 361, 373, 937
HpyCH4IV	ACGT	2 cut(s)	263, 766
HpyCH4V	TGCA	8 cut(s)	56, 392, 436, 446, 577, 791, 802, 837
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 398, 686, 700, 788
HpySE526I	ACGT	2 cut(s)	263, 766
Hsp92I	GRCGYC	3 cut(s)	231, 263, 853
Hsp92II	CATG	4 cut(s)	238, 400, 703, 841
HspAI	GCGC	2 cut(s)	780, 853
KasI	GGCGCC	1 cut(s)	852
Kzo9I	GATC	3 cut(s)	256, 332, 534
LguI	GCTCTTC	1 cut(s)	729
LmnI	GCTCC	4 cut(s)	113, 124, 142, 172
Lsp1109I	GCAGC	3 cut(s)	561, 589, 814
LweI	GCATC	5 cut(s)	65, 154, 401, 622, 631
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	2 cut(s)	263, 766
MaeIII	GTNAC	2 cut(s)	596, 657
MalI	GATC	3 cut(s)	258, 334, 536
MboI	GATC	3 cut(s)	256, 332, 534
MboII	GAAGA	3 cut(s)	56, 716, 914
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	2 cut(s)	256, 534
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	3 cut(s)	141, 313, 491
Mly113I	GGCGCC	1 cut(s)	853
MlyI	GAGTC	2 cut(s)	481, 593
MnlI	CCTC	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	686
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	686
MwoI	GCNNNNNNNGC	5 cut(s)	113, 398, 686, 700, 788
NarI	GGCGCC	1 cut(s)	853
NcoI	CCATGG	2 cut(s)	234, 396
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	3 cut(s)	256, 332, 534
NlaIII	CATG	4 cut(s)	238, 400, 703, 841
NlaIV	GGNNCC	3 cut(s)	115, 486, 854
NmuCI	GTSAC	2 cut(s)	596, 657
NspI	RCATGY	2 cut(s)	703, 841
PciSI	GCTCTTC	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	206, 221, 584
PflMI	CCANNNNNTGG	1 cut(s)	882
PkrI	GCNGC	3 cut(s)	576, 579, 804
Ple19I	CGATCG	1 cut(s)	335
PleI	GAGTC	2 cut(s)	480, 593
PluTI	GGCGCC	1 cut(s)	856
PpsI	GAGTC	2 cut(s)	480, 593
Psp6I	CCWGG	1 cut(s)	684
PspFI	CCCAGC	2 cut(s)	500, 827
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	3 cut(s)	115, 486, 854
PspPI	GGNCC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	579
PsuI	RGATCY	2 cut(s)	256, 534
PvuI	CGATCG	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	630
SapI	GCTCTTC	1 cut(s)	729
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	3 cut(s)	575, 578, 803
Sau3AI	GATC	3 cut(s)	256, 332, 534
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	2 cut(s)	481, 593
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	6 cut(s)	129, 266, 506, 548, 769, 829
SfaNI	GCATC	5 cut(s)	65, 154, 401, 622, 631
SfcI	CTRYAG	3 cut(s)	377, 547, 575
SfoI	GGCGCC	1 cut(s)	854
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	141, 313, 491
SsiI	CCGC	2 cut(s)	190, 566
SspDI	GGCGCC	1 cut(s)	852
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	684
StyI	CCWWGG	3 cut(s)	234, 396, 588
TaiI	ACGT	2 cut(s)	266, 769
TaqI	TCGA	2 cut(s)	331, 366
TasI	AATT	3 cut(s)	141, 313, 491
TfiI	GAWTC	3 cut(s)	206, 221, 584
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	3 cut(s)	438, 528, 666
TseFI	GTSAC	2 cut(s)	596, 657
TseI	GCWGC	3 cut(s)	574, 577, 802
Tsp45I	GTSAC	2 cut(s)	596, 657
TspDTI	ATGAA	6 cut(s)	59, 306, 311, 639, 661, 882
TspGWI	ACGGA	2 cut(s)	159, 465
TspRI	CASTG	3 cut(s)	438, 528, 666
Van91I	CCANNNNNTGG	1 cut(s)	882
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	2 cut(s)	703, 841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	5
ZraI	GACGTC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.