pycom11g14100

membrane

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
13892437 .. 13893000
564 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g14100.2

Sequence Viewer

Length: 387 bp
ATGATCTTAGATACATACGAACAGCCATTCATGATTGATTCTTCCAAGTATAAACATTTGAATCGAACTAGTTGGCGTGTTGGGGCTGATCGAGGAGATTCTGTTTACACTGTAATTGCTGTTGTAAAGAGTCCATATATGCTGCTTAAAGGCTGGTATCGACTGATTCATGATCTGATTACTCGAGAAGGTCCATTTCTTGAAATAGCTTGCATCCTTATTGCTGGTTTGACAAGCATTCTGTGGCTAATTGTGGTTGTTTCAAGTATCGTGTTGGCAGTTTTCATGAACATTTTAATTGGATTGTATGCATCAGTTGTAGTATATCAGGTTTGCTTACACCAGACTATAATCATTGTAATCTCCTTGGCCTTTCATGATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

7.81

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024311)

Species Orthologous Gene IDs
malus_domestica MD09G1174800.v1.1
pyrus_communis pycom10g20450 pycom11g14100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 61, 203, 264
AhlI ACTAGT 1 cut(s) 68
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 68
BfaI CTAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 191
BmsI GCATC 2 cut(s) 222, 320
BsaJI CCNNGG 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 183
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 183
Bsp143I GATC 3 cut(s) 3, 88, 172
BspANI GGCC 1 cut(s) 371
BspHI TCATGA 4 cut(s) 30, 169, 285, 376
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 3 cut(s) 3, 88, 172
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 213
BstKTI GATC 3 cut(s) 6, 91, 175
BstMBI GATC 3 cut(s) 3, 88, 172
BstV1I GCAGC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 211
CciI TCATGA 4 cut(s) 30, 169, 285, 376
Cfr13I GGNCC 1 cut(s) 191
CviAII CATG 4 cut(s) 31, 170, 286, 377
CviJI RGCY 6 cut(s) 25, 86, 153, 209, 247, 371
CviKI_1 RGCY 6 cut(s) 25, 86, 153, 209, 247, 371
DdeI CTNAG 1 cut(s) 7
DpnI GATC 3 cut(s) 5, 90, 174
DpnII GATC 3 cut(s) 3, 88, 172
Eco130I CCWWGG 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 4 cut(s) 34, 173, 289, 380
FatI CATG 4 cut(s) 30, 169, 285, 376
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 371
Hin1II CATG 4 cut(s) 34, 173, 289, 380
HinfI GANTC 5 cut(s) 38, 61, 98, 130, 166
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 6 cut(s) 31, 170, 185, 200, 286, 377
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 213, 311
HpyF3I CTNAG 1 cut(s) 7
Hsp92II CATG 4 cut(s) 34, 173, 289, 380
Kzo9I GATC 3 cut(s) 3, 88, 172
LpnPI CCDG 4 cut(s) 139, 210, 314, 356
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 2 cut(s) 222, 320
MaeI CTAG 1 cut(s) 69
MalI GATC 3 cut(s) 5, 90, 174
MboI GATC 3 cut(s) 3, 88, 172
MboII GAAGA 1 cut(s) 33
MluCI AATT 3 cut(s) 114, 249, 297
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 1 cut(s) 86
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 2 cut(s) 147, 296
Mva1269I GAATGC 1 cut(s) 237
NdeII GATC 3 cut(s) 3, 88, 172
NlaIII CATG 4 cut(s) 34, 173, 289, 380
NsiI ATGCAT 1 cut(s) 313
PaeR7I CTCGAG 1 cut(s) 183
PagI TCATGA 4 cut(s) 30, 169, 285, 376
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 4 cut(s) 38, 61, 98, 166
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 147, 296
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 3 cut(s) 3, 88, 172
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 139
SetI ASST 3 cut(s) 193, 211, 333
SfaNI GCATC 2 cut(s) 222, 320
Sfr274I CTCGAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
SpeI ACTAGT 1 cut(s) 68
Sse9I AATT 3 cut(s) 114, 249, 297
SspMI CTAG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 4 cut(s) 64, 91, 160, 184
TasI AATT 3 cut(s) 114, 249, 297
TfiI GAWTC 4 cut(s) 38, 61, 98, 166
Tru1I TTAA 2 cut(s) 147, 296
Tru9I TTAA 2 cut(s) 147, 296
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 5 cut(s) 19, 158, 274, 302, 365
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 183
XspI CTAG 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.