pycom11g18090

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
20331934 .. 20333508
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1575 bp
ATGTTGAATGTAAACCAATTACTTGCAAATTGCAAAACCCTCAACCATCTAAAGCAACTGCACGTCTTTATCATCACTCTTGGTTACGGCCAGAGTGAAATCTACGCCTTCAAGCTCGTCCGCTTCTGCCTTGTCACTCTCCCCAATGCCAACCTTCCCTATGCTCGCCTCATCTTCGACTGCCTCCACTACCCGAATGTATACCATTACGCTGCCATGATTGCCGGTTATGCCTCCCAGTCCCACCATCATTCTGTTTTTTTGTTGTACCGACGTATGTTTTGTCAGGGAAGCCCTCAACCCAACCATTTTATCTACCCCCACATCTTGAAATCTAGTCCAGAGGTTTTTAAGTCTCACGGGACTGAATTAGTGCATACCCACATCATGAAATCGGGTTTTGGCCAATACCCTGTTGTGCAAACAGCTCTTGTTGATTCCTACTCGAGGTTCCGCTCCGATGTTGTCTCAGCAAGGCGGGTGTTTGATGAAATGTCTGAGAAAAATGTCGTGACCTGGACGGCTATGATTTCCGGGTACACTAGAGTTGGGGACATTGGTGGTGCTCTGTTGTTGTTCGAGAAAATGCCAGAGAGAGATGTCCCTTCTTGGAATGCTGTTATTGCGGGGTGCACGCAGAATGGCCAGTTCTCGGAGGCAATTTCTCTGTTCAAAACAATGGTTCATATTGCACATGGGGAGAAACAGCGAGAAAATAGGCCGAATCAGGTTACTGCTGTATGTGTTCTTTCGGCTTGTAGTCACACTGGCATGCTGCAGCTTGGTAAATCTATGCACAACTATGTTTACAAAAATGCGCTTGGTCCAGATTCATTTGTTTCCAATGCTTTAGTAGATATGTATGGGAAATGTGGGAGCTTGAAAGTGGCAAGAAGGGTTTTCGACAGGACCTCGCAAAAAAGCTTGACCTCTTGGAATTCCATGATAAACTCTTATGCTCTGCACGGCGATAGTGACAATGCAATTGGTGTGTTTGAGGACATGATACAGTGTGGGGCTGATGTAAGACCAGATGAGGTCACTTTTGTAGGCTTATTCAATGCTTGCACGCATGGAGGGTTGGTAGAGAAAGGTATTTCTTATTTTGATTTGATGACTCTGGGTTATGGGATTGAGCCTCAGATAGAACACTATGGATGCTTGATAGACCTTCTTGGTCGAGCAGGTCGATTTGAGGAAGCCATGGAAGCTGTGAGGGGAATGAAAATTGAACCCGATGAGGTCATATGGGGTTCTCTGCTTAATGGATGTAAGATTTATGGTCGCACAGATCTCGCAGAAATTGCAGTTAAAAGGTTGATTCAACTTGAACCAAATAATGGTGCGTATGGGACCATGTTGGCCAATATATATGGGCAGTTGGGGAAGTGGGATGATGTCCGAAATGTGAGAAAGATGCTGAGGGAGCGAAATGCTTATAAAACCCCAGGTTGCAGTTGGATTGAGGTTGATAATCAAGTTTACCAATTTTATTCAATTGACAAATCACATCCTAGAACGGAAGAGATCTACCAAATCCTAGACATTCTCCTCTTATTTCTTCCCGACATATGA

Protein Analysis

525

Amino Acids

59.1

Weight (kDa)

7.03

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 168 - 201 1.6e-06 PPR repeat family
PPR PF01535 171 - 200 4.3e-07 PPR repeat
PPR_2 PF13041 200 - 254 7.8e-06 PPR repeat family
PPR PF01535 203 - 228 4.9e-06 PPR repeat
PPR_2 PF13041 310 - 357 8.2e-08 PPR repeat family
PPR PF01535 311 - 339 2.9e-07 PPR repeat
E_motif PF20431 430 - 489 3.5e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33350 AT1G33350
malus_domestica MD11G1207700.v1.1
prunus_persica Prupe.8G000500_v2.0.a1
pyrus_communis pycom11g18090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1440
Acc36I ACCTGC 1 cut(s) 1175
AccB7I CCANNNNNTGG 1 cut(s) 1340
AccBSI CCGCTC 1 cut(s) 456
AccI GTMKAC 1 cut(s) 201
AciI CCGC 4 cut(s) 121, 454, 478, 626
AcoI YGGCCR 4 cut(s) 88, 403, 643, 1362
AcsI RAATTY 1 cut(s) 937
AfaI GTAC 2 cut(s) 269, 539
AfiI CCNNNNNNNGG 3 cut(s) 447, 652, 1340
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 2 cut(s) 515, 1447
AluBI AGCT 6 cut(s) 115, 428, 781, 879, 924, 1211
AluI AGCT 6 cut(s) 115, 428, 781, 879, 924, 1211
Alw21I GWGCWC 2 cut(s) 568, 635
Alw26I GTCTC 2 cut(s) 360, 472
Alw44I GTGCAC 1 cut(s) 631
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 5 cut(s) 88, 403, 643, 719, 1362
ApaLI GTGCAC 1 cut(s) 631
ApeKI GCWGC 3 cut(s) 212, 775, 778
ApoI RAATTY 1 cut(s) 937
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 3 cut(s) 824, 909, 1353
AsuC2I CCSGG 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 3 cut(s) 824, 909, 1353
BaeGI GKGCMC 1 cut(s) 635
BalI TGGCCA 3 cut(s) 405, 645, 1364
Bbv12I GWGCWC 2 cut(s) 568, 635
BbvCI CCTCAGC 1 cut(s) 1421
BbvI GCAGC 3 cut(s) 199, 762, 790
BccI CCATC 2 cut(s) 54, 255
BceAI ACGGC 3 cut(s) 103, 537, 982
BcgI CGANNNNNNTGC 2 cut(s) 1276, 1310
BciT130I CCWGG 2 cut(s) 517, 1449
BcnI CCSGG 1 cut(s) 535
BcoDI GTCTC 2 cut(s) 360, 472
BfaI CTAG 4 cut(s) 336, 543, 1515, 1541
BfmI CTRYAG 1 cut(s) 776
BfuAI ACCTGC 1 cut(s) 1175
BglII AGATCT 2 cut(s) 1291, 1527
BisI GCNGC 3 cut(s) 213, 776, 779
BlsI GCNGC 3 cut(s) 214, 777, 780
Bme1390I CCNGG 3 cut(s) 517, 535, 1449
Bme18I GGWCC 3 cut(s) 824, 909, 1353
BmeT110I CYCGRG 1 cut(s) 445
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 3 cut(s) 824, 909, 1353
BmiI GGNNCC 2 cut(s) 452, 1354
BmrFI CCNGG 3 cut(s) 517, 535, 1449
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 2 cut(s) 1148, 1407
BmuI ACTGGG 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 1421
BpuMI CCSGG 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 1203, 1447
BsaXI ACNNNNNCTCC 2 cut(s) 1068, 1098
Bsc4I CCNNNNNNNGG 3 cut(s) 447, 652, 1340
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 3 cut(s) 238, 646, 772
BseBI CCWGG 2 cut(s) 517, 1449
BseDI CCNNGG 2 cut(s) 1203, 1447
BseGI GGATG 4 cut(s) 1163, 1274, 1399, 1510
BseLI CCNNNNNNNGG 3 cut(s) 447, 652, 1340
BseMII CTCAG 4 cut(s) 483, 489, 1154, 1412
BseNI ACTGG 3 cut(s) 238, 646, 772
BseRI GAGGAG 1 cut(s) 1541
BseSI GKGCMC 1 cut(s) 635
BseXI GCAGC 3 cut(s) 199, 762, 790
BsgI GTGCAG 2 cut(s) 44, 947
BshFI GGCC 5 cut(s) 90, 405, 645, 721, 1364
BsiHKAI GWGCWC 2 cut(s) 568, 635
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 2 cut(s) 225, 534
BslFI GGGAC 5 cut(s) 226, 376, 566, 587, 1366
BslI CCNNNNNNNGG 3 cut(s) 447, 652, 1340
BsmAI GTCTC 2 cut(s) 360, 472
BsmFI GGGAC 5 cut(s) 226, 376, 566, 587, 1366
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 5 cut(s) 90, 405, 645, 721, 1364
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 2 cut(s) 568, 635
Bsp143I GATC 2 cut(s) 1291, 1527
Bsp19I CCATGG 1 cut(s) 1203
BspACI CCGC 4 cut(s) 121, 454, 478, 626
BspANI GGCC 5 cut(s) 90, 405, 645, 721, 1364
BspCNI CTCAG 4 cut(s) 482, 490, 1153, 1413
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 452, 1354
BspMAI CTGCAG 1 cut(s) 780
BspMI ACCTGC 1 cut(s) 1175
BsrBI CCGCTC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 3 cut(s) 238, 646, 772
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 1203, 1447
BssMI GATC 2 cut(s) 1291, 1527
BssNAI GTATAC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 1203
Bst1107I GTATAC 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 517, 1449
Bst4CI ACNGT 1 cut(s) 1011
Bst6I CTCTTC 1 cut(s) 1518
BstAPI GCANNNNNTGC 1 cut(s) 1304
BstC8I GCNNGC 5 cut(s) 166, 635, 773, 1066, 1070
BstDEI CTNAG 4 cut(s) 469, 498, 1140, 1421
BstDSI CCRYGG 1 cut(s) 1203
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 4 cut(s) 1163, 1274, 1399, 1510
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 2 cut(s) 1294, 1530
BstMAI GTCTC 2 cut(s) 360, 472
BstMBI GATC 2 cut(s) 1291, 1527
BstMWI GCNNNNNNNGC 6 cut(s) 221, 230, 623, 1208, 1304, 1426
BstNI CCWGG 2 cut(s) 517, 1449
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 3 cut(s) 515, 533, 1447
BstSFI CTRYAG 1 cut(s) 776
BstSLI GKGCMC 1 cut(s) 635
BstV1I GCAGC 3 cut(s) 199, 762, 790
BstX2I RGATCY 2 cut(s) 1291, 1527
BstYI RGATCY 2 cut(s) 1291, 1527
BstZ17I GTATAC 1 cut(s) 202
BsuRI GGCC 5 cut(s) 90, 405, 645, 721, 1364
BtgI CCRYGG 1 cut(s) 1203
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 4 cut(s) 1163, 1274, 1399, 1510
BtsIMutI CAGTG 2 cut(s) 765, 1016
BveI ACCTGC 1 cut(s) 1175
Cac8I GCNNGC 5 cut(s) 166, 635, 773, 1066, 1070
CciI TCATGA 1 cut(s) 387
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 824, 909, 1353
Csp6I GTAC 2 cut(s) 268, 538
CviAII CATG 9 cut(s) 217, 388, 695, 772, 943, 1003, 1073, 1204, 1357
CviQI GTAC 2 cut(s) 268, 538
DdeI CTNAG 4 cut(s) 469, 498, 1140, 1421
DpnI GATC 2 cut(s) 1293, 1529
DpnII GATC 2 cut(s) 1291, 1527
EaeI YGGCCR 4 cut(s) 88, 403, 643, 1362
Eam1104I CTCTTC 1 cut(s) 1518
EarI CTCTTC 1 cut(s) 1518
Eco130I CCWWGG 1 cut(s) 1203
Eco47I GGWCC 3 cut(s) 824, 909, 1353
Eco88I CYCGRG 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 909
EcoRI GAATTC 1 cut(s) 937
EcoRII CCWGG 2 cut(s) 515, 1447
EcoT14I CCWWGG 1 cut(s) 1203
ErhI CCWWGG 1 cut(s) 1203
FaeI CATG 9 cut(s) 220, 391, 698, 775, 946, 1006, 1076, 1207, 1360
FaqI GGGAC 5 cut(s) 226, 376, 566, 587, 1366
FatI CATG 9 cut(s) 216, 387, 694, 771, 942, 1002, 1072, 1203, 1356
FauI CCCGC 2 cut(s) 471, 619
FauNDI CATATG 2 cut(s) 1247, 1571
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 213, 776, 779
FokI GGATG 4 cut(s) 1170, 1281, 1406, 1497
Fsp4HI GCNGC 3 cut(s) 213, 776, 779
FspBI CTAG 4 cut(s) 336, 543, 1515, 1541
GlaI GCGC 1 cut(s) 819
GluI GCNGC 3 cut(s) 213, 776, 779
HaeIII GGCC 5 cut(s) 90, 405, 645, 721, 1364
HapII CCGG 2 cut(s) 225, 534
HhaI GCGC 1 cut(s) 820
Hin1II CATG 9 cut(s) 220, 391, 698, 775, 946, 1006, 1076, 1207, 1360
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HindIII AAGCTT 1 cut(s) 922
HinfI GANTC 5 cut(s) 437, 724, 830, 1117, 1321
HpaII CCGG 2 cut(s) 225, 534
Hpy166II GTNNAC 6 cut(s) 13, 202, 540, 633, 808, 1483
Hpy188I TCNGA 5 cut(s) 460, 499, 655, 1143, 1403
Hpy188III TCNNGA 7 cut(s) 328, 341, 388, 511, 580, 827, 1565
Hpy8I GTNNAC 6 cut(s) 13, 202, 540, 633, 808, 1483
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 5 cut(s) 118, 164, 615, 888, 1181
HpyCH4III ACNGT 1 cut(s) 1011
HpyCH4IV ACGT 2 cut(s) 63, 274
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 230, 623, 1208, 1304, 1426
HpyF3I CTNAG 4 cut(s) 469, 498, 1140, 1421
HpySE526I ACGT 2 cut(s) 63, 274
Hsp92II CATG 9 cut(s) 220, 391, 698, 775, 946, 1006, 1076, 1207, 1360
HspAI GCGC 1 cut(s) 818
Kzo9I GATC 2 cut(s) 1291, 1527
LmnI GCTCC 3 cut(s) 461, 876, 1426
Lsp1109I GCAGC 3 cut(s) 199, 762, 790
LweI GCATC 2 cut(s) 1148, 1407
MaeI CTAG 4 cut(s) 336, 543, 1515, 1541
MaeII ACGT 2 cut(s) 63, 274
MaeIII GTNAC 7 cut(s) 83, 133, 511, 730, 761, 974, 1039
MalI GATC 2 cut(s) 1293, 1529
MbiI CCGCTC 1 cut(s) 456
MboI GATC 2 cut(s) 1291, 1527
MboII GAAGA 3 cut(s) 166, 1535, 1553
MfeI CAATTG 2 cut(s) 984, 1497
MflI RGATCY 2 cut(s) 1291, 1527
MhlI GDGCHC 2 cut(s) 568, 635
MlsI TGGCCA 3 cut(s) 405, 645, 1364
MluNI TGGCCA 3 cut(s) 405, 645, 1364
MlyI GAGTC 1 cut(s) 1111
MmeI TCCRAC 1 cut(s) 1439
Mox20I TGGCCA 3 cut(s) 405, 645, 1364
MscI TGGCCA 3 cut(s) 405, 645, 1364
MseI TTAA 3 cut(s) 351, 1263, 1311
MslI CAYNNNNRTG 2 cut(s) 770, 801
Msp20I TGGCCA 3 cut(s) 405, 645, 1364
MspI CCGG 2 cut(s) 225, 534
MspR9I CCNGG 3 cut(s) 517, 535, 1449
MunI CAATTG 2 cut(s) 984, 1497
Mva1269I GAATGC 1 cut(s) 619
MvaI CCWGG 2 cut(s) 517, 1449
MwoI GCNNNNNNNGC 6 cut(s) 221, 230, 623, 1208, 1304, 1426
NciI CCSGG 1 cut(s) 535
NcoI CCATGG 1 cut(s) 1203
NdeI CATATG 2 cut(s) 1247, 1571
NdeII GATC 2 cut(s) 1291, 1527
NlaIII CATG 9 cut(s) 220, 391, 698, 775, 946, 1006, 1076, 1207, 1360
NlaIV GGNNCC 2 cut(s) 452, 1354
NmuCI GTSAC 5 cut(s) 133, 511, 761, 974, 1039
NspI RCATGY 1 cut(s) 775
PaeI GCATGC 1 cut(s) 775
PaeR7I CTCGAG 1 cut(s) 445
PagI TCATGA 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 1186
PctI GAATGC 1 cut(s) 619
PfeI GAWTC 4 cut(s) 437, 724, 830, 1321
PflMI CCANNNNNTGG 1 cut(s) 1340
PkrI GCNGC 3 cut(s) 214, 777, 780
PleI GAGTC 1 cut(s) 1111
PpsI GAGTC 1 cut(s) 1111
PpuMI RGGWCCY 1 cut(s) 909
PsiI TTATAA 1 cut(s) 1440
Psp5II RGGWCCY 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 515, 1447
PspGI CCWGG 2 cut(s) 515, 1447
PspN4I GGNNCC 2 cut(s) 452, 1354
PspPI GGNCC 3 cut(s) 824, 909, 1353
PspPPI RGGWCCY 1 cut(s) 909
PspXI VCTCGAGB 1 cut(s) 445
PstI CTGCAG 1 cut(s) 780
PsuI RGATCY 2 cut(s) 1291, 1527
RsaI GTAC 2 cut(s) 269, 539
RsaNI GTAC 2 cut(s) 268, 538
RseI CAYNNNNRTG 2 cut(s) 770, 801
SaqAI TTAA 3 cut(s) 351, 1263, 1311
SatI GCNGC 3 cut(s) 213, 776, 779
Sau3AI GATC 2 cut(s) 1291, 1527
Sau96I GGNCC 3 cut(s) 824, 909, 1353
SchI GAGTC 1 cut(s) 1111
ScrFI CCNGG 3 cut(s) 517, 535, 1449
SduI GDGCHC 2 cut(s) 568, 635
SfaNI GCATC 2 cut(s) 1148, 1407
SfcI CTRYAG 1 cut(s) 776
Sfr274I CTCGAG 1 cut(s) 445
SinI GGWCC 3 cut(s) 824, 909, 1353
SlaI CTCGAG 1 cut(s) 445
SmiMI CAYNNNNRTG 2 cut(s) 770, 801
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SphI GCATGC 1 cut(s) 775
SsiI CCGC 4 cut(s) 121, 454, 478, 626
SspMI CTAG 4 cut(s) 336, 543, 1515, 1541
StyD4I CCNGG 3 cut(s) 515, 533, 1447
StyI CCWWGG 1 cut(s) 1203
TaaI ACNGT 1 cut(s) 1011
TaiI ACGT 2 cut(s) 66, 277
TaqI TCGA 6 cut(s) 177, 446, 579, 903, 1180, 1189
TfiI GAWTC 4 cut(s) 437, 724, 830, 1321
Tru1I TTAA 3 cut(s) 351, 1263, 1311
Tru9I TTAA 3 cut(s) 351, 1263, 1311
TscAI CASTG 2 cut(s) 772, 1016
TseFI GTSAC 5 cut(s) 133, 511, 761, 974, 1039
TseI GCWGC 3 cut(s) 212, 775, 778
Tsp45I GTSAC 5 cut(s) 133, 511, 761, 974, 1039
TspDTI ATGAA 5 cut(s) 404, 504, 674, 822, 1238
TspGWI ACGGA 1 cut(s) 1535
TspRI CASTG 2 cut(s) 772, 1016
Van91I CCANNNNNTGG 1 cut(s) 1340
VneI GTGCAC 1 cut(s) 631
VpaK11BI GGWCC 3 cut(s) 824, 909, 1353
XagI CCTNNNNNAGG 1 cut(s) 445
XapI RAATTY 1 cut(s) 937
XceI RCATGY 1 cut(s) 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 1455
XhoI CTCGAG 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 4 cut(s) 336, 543, 1515, 1541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.