pycom11g18120

COP9 signalosome complex subunit 7-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
20371492 .. 20371722
231 bp
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UTR
Exon/CDS
Intron
pycom11g18120.1

Sequence Viewer

Length: 231 bp
ATGTATAATCAAAATTTTGTTGCAGCCAAAGACAAAATAAAATTGTTGATTGTTACTGGGTCTTGTTTCATATGCATTTGTTTTTTTATAGTGGAATATGTGCAGCTTGAAGGAACTGAAAATTATGTCTACCTCGATGTGCTTCGATTGTTTGCACATGGCACATGGAGTGATTACAAGAGTAAGCACGCAAAAATCGCTTCGTCTTTTGGTCGAGTTTCTAATAGATGA

Protein Analysis

77

Amino Acids

8.76

Weight (kDa)

8.86

Isoelectric Point (pI)

4.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024681)

Species Orthologous Gene IDs
pyrus_communis pycom11g18120
rosa_chinensis RchiOBHm_Chr1g0347731
rosa_samantha Rh3CG356900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 13
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 23, 103
ApoI RAATTY 1 cut(s) 13
BbvI GCAGC 2 cut(s) 35, 115
BisI GCNGC 2 cut(s) 24, 104
BlsI GCNGC 2 cut(s) 25, 105
BmrI ACTGGG 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 61
BseXI GCAGC 2 cut(s) 35, 115
BsgI GTGCAG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 35, 115
Cac8I GCNNGC 1 cut(s) 189
CviAII CATG 2 cut(s) 158, 165
CviJI RGCY 2 cut(s) 26, 106
CviKI_1 RGCY 2 cut(s) 26, 106
EcoT22I ATGCAT 1 cut(s) 77
FaeI CATG 2 cut(s) 161, 168
FaiI YATR 8 cut(s) 6, 71, 73, 89, 99, 126, 159, 166
FatI CATG 2 cut(s) 157, 164
FauNDI CATATG 1 cut(s) 71
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 24, 104
Fsp4HI GCNGC 2 cut(s) 24, 104
FspEI CC 9 cut(s) 40, 42, 43, 77, 96, 144, 146, 151, 195
GluI GCNGC 2 cut(s) 24, 104
Hin1II CATG 2 cut(s) 161, 168
Hpy166II GTNNAC 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 4 cut(s) 23, 75, 103, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 161, 168
LpnPI CCDG 1 cut(s) 42
Lsp1109I GCAGC 2 cut(s) 35, 115
MaeIII GTNAC 1 cut(s) 52
MluCI AATT 3 cut(s) 13, 41, 121
MnlI CCTC 1 cut(s) 143
Mph1103I ATGCAT 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeI CATATG 1 cut(s) 71
NlaIII CATG 2 cut(s) 161, 168
NsiI ATGCAT 1 cut(s) 77
PkrI GCNGC 2 cut(s) 25, 105
SatI GCNGC 2 cut(s) 24, 104
SetI ASST 2 cut(s) 108, 135
SgeI CNNG 9 cut(s) 69, 75, 119, 146, 170, 177, 190, 200, 227
Sse9I AATT 3 cut(s) 13, 41, 121
TaqI TCGA 3 cut(s) 135, 145, 214
TasI AATT 3 cut(s) 13, 41, 121
TseI GCWGC 2 cut(s) 23, 103
TspDTI ATGAA 1 cut(s) 58
XapI RAATTY 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.