pycom11g18960
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0022554
Physical Location & Seq
Forward (+)
21207431 .. 21207715
285 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18960.1

Sequence Viewer

Length: 285 bp
ATGGAGCATCTGAATGTTCTTTCTCCCCCTTCGACCCCTAAGGTCTCCAATGGCAAGCAGGACAGCCACAACAAGGGCAACTTCGACCGTGTCCACGAGACCAAGTCCCTGATTTGCGCCCTCAACCTCCTCTGGAACCTTTCCGTCCTTCCCGACTTATTCATCGTTGTTTCCAACATCTACAATGCCGCCTCGGAGCCTCTTTCACCGATGACGATGGTTTGGTACAATTTCCTCCAACTCCCTTTTGGCTTTTCAAAGTTTTGGGTTTTGGATCAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

95

Amino Acids

10.74

Weight (kDa)

6.23

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022554)

Species Orthologous Gene IDs
pyrus_communis pycom11g18960 pycom13g16180 pycom16g15760
rosa_multiflora Rmu_ssc0000340.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 282
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 49, 92
AlwI GGATC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 198
AxyI CCTNAGG 1 cut(s) 39
BauI CACGAG 1 cut(s) 95
BccI CCATC 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 49, 92
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 137, 198
BmsI GCATC 1 cut(s) 16
BsaI GGTCTC 2 cut(s) 49, 92
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse21I CCTNAGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 88
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 49, 92
BsmFI GGGAC 1 cut(s) 91
Bso31I GGTCTC 2 cut(s) 49, 92
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 137, 198
BspPI GGATC 1 cut(s) 282
BspTNI GGTCTC 2 cut(s) 49, 92
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 274
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 2 cut(s) 49, 92
BstMBI GATC 1 cut(s) 274
BstMCI CGRYCG 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 56
CfoI GCGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 226
CviJI RGCY 3 cut(s) 66, 199, 252
CviKI_1 RGCY 3 cut(s) 66, 199, 252
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eco31I GGTCTC 2 cut(s) 49, 92
Eco81I CCTNAGG 1 cut(s) 39
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FaqI GGGAC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 189
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 12, 196
Hpy188III TCNNGA 2 cut(s) 133, 152
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 39, 158
HpyCH4III ACNGT 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 39
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 2 cut(s) 4, 196
LpnPI CCDG 3 cut(s) 44, 118, 122
LweI GCATC 1 cut(s) 16
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MluCI AATT 1 cut(s) 229
MmeI TCCRAC 2 cut(s) 198, 262
MnlI CCTC 6 cut(s) 131, 137, 140, 202, 210, 245
MslI CAYNNNNRTG 1 cut(s) 12
NdeII GATC 1 cut(s) 274
NlaIV GGNNCC 2 cut(s) 137, 198
PflFI GACNNNGTC 2 cut(s) 89, 103
PkrI GCNGC 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 137, 198
PsyI GACNNNGTC 2 cut(s) 89, 103
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 12
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 274
SetI ASST 3 cut(s) 45, 129, 141
SfaNI GCATC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 189
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 32, 84
TasI AATT 1 cut(s) 229
TauI GCSGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 151
TspGWI ACGGA 1 cut(s) 133
Tth111I GACNNNGTC 2 cut(s) 89, 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.