Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000340.1

Orthogroup ID

OG0022554

Physical Location & Seq

Genomic Coordinates Forward (+)

76985 .. 78396

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000340.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggctcagctggacagcctcgacctcattagcaagaccaagtccctgatctctgccctcgacctcgtctcccgcgacctccctctccctcctcacctcttcgacctcgtttcctccatctaccacgccccccaggcccccaatcccgaccctgccgacggtttgggtgaaggtgagagctgtggaggggatgatttgttgggagaccttgaagatgcgcttttgaaccaacgtcacaagtgcagttcgggtgttggactaattgaatccggggagaagcgtttccaaagccaccttcggcgtagattggctcagcttgaagaactaccttcaagtagaggagaggagttgcagaccaagtgcttgcttgagttctatgggctaaagagtgttaatctcaatcttaaaatgactggtcgttcttttcttgaattgcaaaacaaggtgcgttctgatgtgagttcagaatacttgctccgcatgagctgcgcttctccggacaaaacattgtttgattggggaaggatgcgattgccccgtccactctatggtgttggagatgcatttgccgtggaggctgacgatcagttcaggaaaaaacgagatgctgaggtcataaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Helicase_C SNF2_N SnAC

Protein Analysis

207

Amino Acids

23.03

Weight (kDa)

5.3

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022554)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g18960 pycom13g16180 pycom16g15760
rosa_multiflora	Rmu_ssc0000340.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccII	CGCG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	496
AciI	CCGC	2 cut(s)	73, 478
AfiI	CCNNNNNNNGG	2 cut(s)	158, 548
AgsI	TTSAA	6 cut(s)	212, 226, 266, 320, 333, 431
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	4 cut(s)	10, 180, 316, 486
AluI	AGCT	4 cut(s)	10, 180, 316, 486
Alw26I	GTCTC	2 cut(s)	73, 198
Aor13HI	TCCGGA	1 cut(s)	496
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	220, 491
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	86, 179, 185
BbvCI	CCTCAGC	1 cut(s)	609
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	73, 198
BglI	GCCNNNNNGGC	2 cut(s)	134, 575
BisI	GCNGC	1 cut(s)	487
BlpI	GCTNAGC	2 cut(s)	6, 312
BlsI	GCNGC	1 cut(s)	488
Bme1390I	CCNGG	2 cut(s)	134, 271
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	2 cut(s)	134, 271
BmsI	GCATC	4 cut(s)	205, 516, 550, 595
Bpu10I	CCTNAGC	1 cut(s)	609
Bpu1102I	GCTNAGC	2 cut(s)	6, 312
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	132, 270, 570
BsaWI	WCCGGW	1 cut(s)	496
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 548
Bse1I	ACTGG	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	132, 270, 570
BseGI	GGATG	2 cut(s)	196, 531
BseLI	CCNNNNNNNGG	2 cut(s)	158, 548
BseMII	CTCAG	3 cut(s)	20, 326, 600
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	3 cut(s)	81, 354, 359
BseXI	GCAGC	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	270, 497
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	158, 548
BsmAI	GTCTC	2 cut(s)	73, 198
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	48, 583
Bsp1720I	GCTNAGC	2 cut(s)	6, 312
BspACI	CCGC	2 cut(s)	73, 478
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	3 cut(s)	19, 325, 601
BspEI	TCCGGA	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	3 cut(s)	132, 270, 570
BssMI	GATC	2 cut(s)	48, 583
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	3 cut(s)	6, 312, 609
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	196, 531
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	220, 491
BstKTI	GATC	2 cut(s)	51, 586
BstMAI	GTCTC	2 cut(s)	73, 198
BstMBI	GATC	2 cut(s)	48, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 486, 575
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 269
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	473
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	2 cut(s)	196, 531
Cac8I	GCNNGC	1 cut(s)	365
CfoI	GCGC	2 cut(s)	220, 491
Cfr13I	GGNCC	1 cut(s)	136
CviAII	CATG	1 cut(s)	481
DdeI	CTNAG	3 cut(s)	6, 312, 609
DpnI	GATC	2 cut(s)	50, 585
DpnII	GATC	2 cut(s)	48, 583
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	565
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	1 cut(s)	484
FaiI	YATR	4 cut(s)	378, 482, 549, 617
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	480
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	2 cut(s)	203, 538
Fsp4HI	GCNGC	1 cut(s)	487
GlaI	GCGC	2 cut(s)	219, 490
GluI	GCNGC	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	270, 497
HhaI	GCGC	2 cut(s)	220, 491
Hin1II	CATG	1 cut(s)	484
Hin6I	GCGC	2 cut(s)	218, 489
HinP1I	GCGC	2 cut(s)	218, 489
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	2 cut(s)	270, 497
HphI	GGTGA	3 cut(s)	86, 179, 185
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	2 cut(s)	454, 466
Hpy188III	TCNNGA	4 cut(s)	146, 428, 497, 592
Hpy8I	GTNNAC	1 cut(s)	542
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	4 cut(s)	164, 305, 339, 516
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	4 cut(s)	243, 352, 436, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 486, 575
HpyF3I	CTNAG	3 cut(s)	6, 312, 609
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	484
HspAI	GCGC	2 cut(s)	218, 489
Kpn2I	TCCGGA	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	48, 583
LmnI	GCTCC	1 cut(s)	480
LpnPI	CCDG	8 cut(s)	59, 119, 146, 165, 283, 399, 510, 577
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	4 cut(s)	205, 516, 550, 595
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	2 cut(s)	50, 585
MboI	GATC	2 cut(s)	48, 583
MboII	GAAGA	3 cut(s)	91, 224, 332
MluCI	AATT	2 cut(s)	261, 431
MmeI	TCCRAC	2 cut(s)	235, 535
Mph1103I	ATGCAT	1 cut(s)	565
MroI	TCCGGA	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	2 cut(s)	393, 405
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	2 cut(s)	270, 497
MspR9I	CCNGG	2 cut(s)	134, 271
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	134, 486, 575
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	48, 583
NlaIII	CATG	1 cut(s)	484
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	266
PflFI	GACNNNGTC	2 cut(s)	40, 65
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	136
PsyI	GACNNNGTC	2 cut(s)	40, 65
PvuII	CAGCTG	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	393, 405
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	2 cut(s)	48, 583
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	134, 271
SfaNI	GCATC	4 cut(s)	205, 516, 550, 595
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	261, 431
SsiI	CCGC	2 cut(s)	73, 478
StyD4I	CCNGG	2 cut(s)	132, 269
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	3 cut(s)	21, 60, 102
TasI	AATT	2 cut(s)	261, 431
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	393, 405
Tru9I	TTAA	2 cut(s)	393, 405
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	486
Tsp45I	GTSAC	1 cut(s)	233
Tth111I	GACNNNGTC	2 cut(s)	40, 65
Van91I	CCANNNNNTGG	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.