pycom11g21040

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
24145372 .. 24145578
207 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGTTTGCTTTTGTTTTCTAGTAGACCAGAGGAGGAAGGTGTGGCGGACCAAGCCGGTGGCTGGAACATGTTCAAGATGTGGGAGCGGAGCAAGCGTGGCTGACATAAAGACTTCGACTAGGTTTTGCTATATTCCGTTTTACTGGAAATCTTGGAAGGCCATCATGTGCACTTTTTGTGGATCCATTCTCAAATCTTACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.85

Weight (kDa)

9.72

Isoelectric Point (pI)

25.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52855
malus_domestica MD03G1221400.v1.1 MD11G1238900.v1.1
prunus_persica Prupe.4G187900_v2.0.a1 Prupe.4G187900_v2.0.a1
pyrus_communis pycom03g17030 pycom11g21040
rosa_chinensis RchiOBHm_Chr5g0035051
rosa_roxburghii Rroxscaffold_1G00045360
rosa_rugosa Rorug05G0149600
rosa_wichuraiana Rw5G022150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AccI GTMKAC 1 cut(s) 24
AciI CCGC 2 cut(s) 46, 87
AclWI GGATC 2 cut(s) 177, 190
AfiI CCNNNNNNNGG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 1 cut(s) 75
Alw21I GWGCWC 1 cut(s) 173
Alw44I GTGCAC 1 cut(s) 169
AlwI GGATC 2 cut(s) 177, 190
AoxI GGCC 1 cut(s) 159
ApaLI GTGCAC 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 48
AvaII GGWCC 1 cut(s) 48
BaeGI GKGCMC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 173
BccI CCATC 1 cut(s) 170
BfaI CTAG 2 cut(s) 20, 120
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 173
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 62
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 182
BspACI CCGC 2 cut(s) 46, 87
BspANI GGCC 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 2 cut(s) 177, 190
BsrBI CCGCTC 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 185
BstMBI GATC 1 cut(s) 182
BstMWI GCNNNNNNNGC 3 cut(s) 52, 93, 98
BstNSI RCATGY 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 48
CviAII CATG 2 cut(s) 69, 166
CviJI RGCY 4 cut(s) 55, 62, 101, 161
CviKI_1 RGCY 4 cut(s) 55, 62, 101, 161
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 48
FaeI CATG 2 cut(s) 72, 169
FaiI YATR 4 cut(s) 70, 107, 132, 167
FatI CATG 2 cut(s) 68, 165
FblI GTMKAC 1 cut(s) 24
FspBI CTAG 2 cut(s) 20, 120
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 56
Hin1II CATG 2 cut(s) 72, 169
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 25, 171
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 2 cut(s) 25, 171
HpyAV CCTTC 2 cut(s) 31, 151
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 93, 98
Hsp92II CATG 2 cut(s) 72, 169
Kzo9I GATC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 84, 89
LpnPI CCDG 4 cut(s) 41, 48, 69, 130
MaeI CTAG 2 cut(s) 20, 120
MalI GATC 1 cut(s) 184
MbiI CCGCTC 1 cut(s) 87
MboI GATC 1 cut(s) 182
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 173
MnlI CCTC 2 cut(s) 24, 27
MroXI GAANNNNTTC 1 cut(s) 70
MspI CCGG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 52, 93, 98
NdeII GATC 1 cut(s) 182
NlaIII CATG 2 cut(s) 72, 169
NlaIV GGNNCC 1 cut(s) 184
NspI RCATGY 1 cut(s) 72
PciI ACATGT 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 70
PscI ACATGT 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 48
PsuI RGATCY 1 cut(s) 182
Sau3AI GATC 1 cut(s) 182
Sau96I GGNCC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 173
SetI ASST 2 cut(s) 42, 125
SinI GGWCC 1 cut(s) 48
SsiI CCGC 2 cut(s) 46, 87
SspMI CTAG 2 cut(s) 20, 120
TaqI TCGA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 126
VneI GTGCAC 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 48
XceI RCATGY 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 2 cut(s) 20, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.