Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012347

Physical Location & Seq

Genomic Coordinates Reverse (-)

26083548 .. 26085808

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCAGTTACAATCGCAGCTGTAGGCGTAATCCTTGGCTGGCCATTCTCAATCTTAGCTTTCTTACCAGTCACATTCTACTCTCTAGCTAGAAGATTCAAACAAGCTTTTCTTGCCGGGGCCGCCATCTCTGTTGCTCTTCTTGTCTCGTCGGTTCTCGTTGATCATTACTACTACAGTGGATGGACATCCTCTCTGTTAAATCTGTTGATCTATAATGTTGCAGGAGGCGGTGAGAGCCATTTGTATGGAACTGAGGGGCCGCTATATTATCTAAGGAATGGATTTAACAATTTTAACTTTTGTTTTGTACTTGCATTGCTGTTTTTGGCAATGGTGCCGCTTGCAAGGAAAAAGTATGCCCCCAACTTGCTGATTGTTGTCTCACCAGTTTATATTTGGTTGGCATTCATGTCTTTGCAGCCACACAAAGAAGAAAGGTTCCTTTATCCAATATATCCACTAATTTGTGTTGCTGCTTCGGCTGTCATCGAGAGCTTTCCTGATGTTTTCCGATCCGATTATGATTCCCAAGGAAATTCTCCGACGGTTATGACAGCAAAGATTCTTAGACCGGTGGTTCTTAGCCTTATATTATGTGCCTCCCATGCTCGTACGTTTTCAGTGATCAATGGTTATTCTGCGCCTATAGAGGTTTACAAGCTTTTAGAGGATCATGACGATGTAGGAACAGGTTCTGTACTCTGCGTTGGAAGTGAATGGCACCGTTTCCCATCATCATTTTTTGTTCCTGATTATGTGGGAGAGGTTCGTTGGATTGATGATGGGTTCCGAGGACTTCTTCCCTTCCCCTTCAATTCTACCTTGGGTGGAACTGCAGCAGCGCCACCATATCTTAACAATAAGAACAAAGCGTCTGACTTGCAATATCTCCGGGATCTTGATCAATGTACATTCCTTGTCAAGCTGCAGCTTAGTCGGCCTTTCCCTTCTCGGGGAAGTGACTTATCAACTTGGGAGGTGATTGGAGCGTTGCCTTACTTAGACAGAGAGCTCTCGCGTGCCAAGTACCGGTCCTTTTTCATCCCGTATCTGTGGCAGCACAAGAATATTTTTGGCATGTACAAGCTGCTTAGAAGGGTACCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000026 GO:0000030 GO:0003674 GO:0003824 GO:0004376 GO:0004377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006490 GO:0006508 GO:0006511 GO:0006629 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

371

Amino Acids

41.63

Weight (kDa)

8.93

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_22	PF03901	2 - 251	1.1e-61	Alg9-like mannosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16900
fragaria_vesca	FvH4_3g18450 FvH4_3g18450 FvH4_3g18450
malus_domestica	MD03G1241900.v1.1 MD11G1261800.v1.1
prunus_persica	Prupe.4G166500_v2.0.a1
pyrus_communis	pycom03g18900 pycom11g23080
rosa_chinensis	RchiOBHm_Chr5g0031201
rosa_laevigata	RLG00000033289
rosa_multiflora	Rmu_sc0004014.1_g000016
rosa_roxburghii	Rroxscaffold_1G00049080
rosa_rugosa	Rorug05G0122800
rosa_samantha	Rh5AG216500 Rh5BG215800 Rh5CG239400 Rh5DG220700
rosa_wichuraiana	Rw5G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1102
AccB1I	GGYRCC	3 cut(s)	337, 723, 1102
AccII	CGCG	1 cut(s)	1021
AciI	CCGC	4 cut(s)	123, 231, 263, 341
AclWI	GGATC	3 cut(s)	510, 681, 906
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	538
AfaI	GTAC	7 cut(s)	312, 616, 702, 913, 1031, 1085, 1104
AfiI	CCNNNNNNNGG	3 cut(s)	955, 956, 1032
AgeI	ACCGGT	2 cut(s)	574, 1032
AgsI	TTSAA	2 cut(s)	100, 817
Alw21I	GWGCWC	1 cut(s)	1017
Alw26I	GTCTC	2 cut(s)	151, 388
AlwI	GGATC	3 cut(s)	510, 681, 906
AlwNI	CAGNNNCTG	1 cut(s)	698
Ama87I	CYCGRG	1 cut(s)	954
AoxI	GGCC	4 cut(s)	41, 120, 260, 941
ApeKI	GCWGC	9 cut(s)	17, 421, 476, 839, 842, 928, 931, 1060, 1090
ApoI	RAATTY	1 cut(s)	538
AsiGI	ACCGGT	2 cut(s)	574, 1032
Asp700I	GAANNNNTTC	1 cut(s)	694
Asp718I	GGTACC	1 cut(s)	1102
AspLEI	GCGC	2 cut(s)	646, 847
AspS9I	GGNCC	3 cut(s)	120, 260, 1035
AsuC2I	CCSGG	2 cut(s)	118, 896
AsuHPI	GGTGA	3 cut(s)	245, 378, 994
AvaI	CYCGRG	1 cut(s)	954
AvaII	GGWCC	1 cut(s)	1035
BalI	TGGCCA	1 cut(s)	43
BanI	GGYRCC	3 cut(s)	337, 723, 1102
BanII	GRGCYC	1 cut(s)	1017
Bbv12I	GWGCWC	1 cut(s)	1017
BbvI	GCAGC	9 cut(s)	29, 433, 463, 851, 854, 915, 943, 1072, 1077
BccI	CCATC	4 cut(s)	134, 177, 742, 779
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BclI	TGATCA	3 cut(s)	163, 627, 904
BcnI	CCSGG	2 cut(s)	118, 896
BcoDI	GTCTC	2 cut(s)	151, 388
BfaI	CTAG	2 cut(s)	86, 90
BfmI	CTRYAG	5 cut(s)	21, 175, 648, 837, 929
BfoI	RGCGCY	1 cut(s)	848
Bme1390I	CCNGG	2 cut(s)	118, 896
Bme18I	GGWCC	1 cut(s)	1035
BmeT110I	CYCGRG	1 cut(s)	954
BmgT120I	GGNCC	3 cut(s)	120, 260, 1035
BmiI	GGNNCC	7 cut(s)	121, 261, 339, 443, 725, 791, 1104
BmrFI	CCNGG	2 cut(s)	118, 896
BpuMI	CCSGG	2 cut(s)	118, 896
BsaBI	GATNNNNATC	2 cut(s)	187, 903
BsaJI	CCNNGG	5 cut(s)	34, 117, 532, 793, 825
BsaWI	WCCGGW	2 cut(s)	574, 1032
Bsc4I	CCNNNNNNNGG	3 cut(s)	955, 956, 1032
Bse118I	RCCGGY	2 cut(s)	574, 1032
Bse1I	ACTGG	2 cut(s)	68, 389
Bse3DI	GCAATG	2 cut(s)	317, 339
Bse8I	GATNNNNATC	2 cut(s)	187, 903
BseDI	CCNNGG	5 cut(s)	34, 117, 532, 793, 825
BseGI	GGATG	3 cut(s)	188, 188, 1044
BseJI	GATNNNNATC	2 cut(s)	187, 903
BseLI	CCNNNNNNNGG	3 cut(s)	955, 956, 1032
BseMI	GCAATG	2 cut(s)	317, 339
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	68, 389
BseXI	GCAGC	9 cut(s)	29, 433, 463, 851, 854, 915, 943, 1072, 1077
Bsh1236I	CGCG	1 cut(s)	1021
BshFI	GGCC	4 cut(s)	43, 122, 262, 943
BshNI	GGYRCC	3 cut(s)	337, 723, 1102
BshTI	ACCGGT	2 cut(s)	574, 1032
BsiHKAI	GWGCWC	1 cut(s)	1017
BsiHKCI	CYCGRG	1 cut(s)	954
BsiSI	CCGG	4 cut(s)	117, 575, 895, 1033
BsiWI	CGTACG	1 cut(s)	614
BslI	CCNNNNNNNGG	3 cut(s)	955, 956, 1032
BsmAI	GTCTC	2 cut(s)	151, 388
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	4 cut(s)	43, 122, 262, 943
BsoBI	CYCGRG	1 cut(s)	954
Bsp1286I	GDGCHC	1 cut(s)	1017
Bsp1407I	TGTACA	2 cut(s)	911, 1083
Bsp143I	GATC	7 cut(s)	163, 210, 515, 627, 673, 898, 904
BspACI	CCGC	4 cut(s)	123, 231, 263, 341
BspANI	GGCC	4 cut(s)	43, 122, 262, 943
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	1021
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	7 cut(s)	121, 261, 339, 443, 725, 791, 1104
BspMAI	CTGCAG	2 cut(s)	841, 933
BspPI	GGATC	3 cut(s)	510, 681, 906
BspQI	GCTCTTC	1 cut(s)	144
BspT107I	GGYRCC	3 cut(s)	337, 723, 1102
BsrDI	GCAATG	2 cut(s)	317, 339
BsrFI	RCCGGY	2 cut(s)	574, 1032
BsrGI	TGTACA	2 cut(s)	911, 1083
BsrI	ACTGG	2 cut(s)	68, 389
BssAI	RCCGGY	2 cut(s)	574, 1032
BssECI	CCNNGG	5 cut(s)	34, 117, 532, 793, 825
BssMI	GATC	7 cut(s)	163, 210, 515, 627, 673, 898, 904
BssT1I	CCWWGG	3 cut(s)	34, 532, 825
Bst4CI	ACNGT	3 cut(s)	179, 550, 728
Bst6I	CTCTTC	1 cut(s)	144
BstAUI	TGTACA	2 cut(s)	911, 1083
BstC8I	GCNNGC	3 cut(s)	41, 345, 1023
BstDEI	CTNAG	8 cut(s)	55, 255, 275, 569, 584, 935, 1003, 1094
BstF5I	GGATG	3 cut(s)	188, 188, 1044
BstFNI	CGCG	1 cut(s)	1021
BstH2I	RGCGCY	1 cut(s)	848
BstHHI	GCGC	2 cut(s)	646, 847
BstKTI	GATC	7 cut(s)	166, 213, 518, 630, 676, 901, 907
BstMAI	GTCTC	2 cut(s)	151, 388
BstMBI	GATC	7 cut(s)	163, 210, 515, 627, 673, 898, 904
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 122, 237, 482, 608, 940
BstNSI	RCATGY	1 cut(s)	1084
BstSCI	CCNGG	2 cut(s)	116, 894
BstSFI	CTRYAG	5 cut(s)	21, 175, 648, 837, 929
BstUI	CGCG	1 cut(s)	1021
BstV1I	GCAGC	9 cut(s)	29, 433, 463, 851, 854, 915, 943, 1072, 1077
BstX2I	RGATCY	1 cut(s)	898
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	4 cut(s)	43, 122, 262, 943
BtsCI	GGATG	3 cut(s)	188, 188, 1044
BtsIMutI	CAGTG	2 cut(s)	184, 630
Cac8I	GCNNGC	3 cut(s)	41, 345, 1023
CaiI	CAGNNNCTG	1 cut(s)	698
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	2 cut(s)	646, 847
Cfr10I	RCCGGY	2 cut(s)	574, 1032
Cfr13I	GGNCC	3 cut(s)	120, 260, 1035
CseI	GACGC	1 cut(s)	864
Csp6I	GTAC	7 cut(s)	311, 615, 701, 912, 1030, 1084, 1103
CspAI	ACCGGT	2 cut(s)	574, 1032
CviAII	CATG	4 cut(s)	412, 608, 677, 1081
CviQI	GTAC	7 cut(s)	311, 615, 701, 912, 1030, 1084, 1103
DdeI	CTNAG	8 cut(s)	55, 255, 275, 569, 584, 935, 1003, 1094
DpnI	GATC	7 cut(s)	165, 212, 517, 629, 675, 900, 906
DpnII	GATC	7 cut(s)	163, 210, 515, 627, 673, 898, 904
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	1015
Eco130I	CCWWGG	3 cut(s)	34, 532, 825
Eco24I	GRGCYC	1 cut(s)	1017
Eco47I	GGWCC	1 cut(s)	1035
Eco53kI	GAGCTC	1 cut(s)	1015
Eco88I	CYCGRG	1 cut(s)	954
EcoICRI	GAGCTC	1 cut(s)	1015
EcoT14I	CCWWGG	3 cut(s)	34, 532, 825
EcoT38I	GRGCYC	1 cut(s)	1017
ErhI	CCWWGG	3 cut(s)	34, 532, 825
FaeI	CATG	4 cut(s)	415, 611, 680, 1084
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	4 cut(s)	411, 607, 676, 1080
FbaI	TGATCA	3 cut(s)	163, 627, 904
FokI	GGATG	3 cut(s)	175, 195, 1031
FriOI	GRGCYC	1 cut(s)	1017
FspBI	CTAG	2 cut(s)	86, 90
GlaI	GCGC	2 cut(s)	645, 846
HaeII	RGCGCY	1 cut(s)	848
HaeIII	GGCC	4 cut(s)	43, 122, 262, 943
HapII	CCGG	4 cut(s)	117, 575, 895, 1033
HgaI	GACGC	1 cut(s)	864
HhaI	GCGC	2 cut(s)	646, 847
Hin1II	CATG	4 cut(s)	415, 611, 680, 1084
Hin6I	GCGC	2 cut(s)	644, 845
HinP1I	GCGC	2 cut(s)	644, 845
HindIII	AAGCTT	2 cut(s)	105, 662
HinfI	GANTC	3 cut(s)	96, 527, 565
HpaII	CCGG	4 cut(s)	117, 575, 895, 1033
HphI	GGTGA	3 cut(s)	245, 378, 994
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188I	TCNGA	5 cut(s)	515, 520, 546, 794, 880
Hpy188III	TCNNGA	5 cut(s)	493, 503, 677, 752, 902
Hpy8I	GTNNAC	1 cut(s)	658
Hpy99I	CGWCG	2 cut(s)	154, 550
HpyAV	CCTTC	4 cut(s)	817, 823, 960, 1092
HpyCH4III	ACNGT	3 cut(s)	179, 550, 728
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	7 cut(s)	224, 317, 347, 421, 839, 886, 931
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 122, 237, 482, 608, 940
HpyF3I	CTNAG	8 cut(s)	55, 255, 275, 569, 584, 935, 1003, 1094
HpySE526I	ACGT	1 cut(s)	617
Hsp92II	CATG	4 cut(s)	415, 611, 680, 1084
HspAI	GCGC	2 cut(s)	644, 845
KpnI	GGTACC	1 cut(s)	1106
Ksp22I	TGATCA	3 cut(s)	163, 627, 904
Kzo9I	GATC	7 cut(s)	163, 210, 515, 627, 673, 898, 904
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	989
Lsp1109I	GCAGC	9 cut(s)	29, 433, 463, 851, 854, 915, 943, 1072, 1077
MaeI	CTAG	2 cut(s)	86, 90
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	3 cut(s)	7, 70, 962
MalI	GATC	7 cut(s)	165, 212, 517, 629, 675, 900, 906
MboI	GATC	7 cut(s)	163, 210, 515, 627, 673, 898, 904
MboII	GAAGA	4 cut(s)	105, 131, 446, 794
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	1 cut(s)	1017
MlsI	TGGCCA	1 cut(s)	43
MluCI	AATT	4 cut(s)	292, 465, 538, 817
MluNI	TGGCCA	1 cut(s)	43
MmeI	TCCRAC	3 cut(s)	569, 691, 755
MnlI	CCTC	9 cut(s)	202, 221, 250, 613, 646, 664, 760, 788, 973
Mox20I	TGGCCA	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	694
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	4 cut(s)	200, 288, 297, 858
MslI	CAYNNNNRTG	2 cut(s)	246, 681
Msp20I	TGGCCA	1 cut(s)	43
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	4 cut(s)	117, 575, 895, 1033
MspR9I	CCNGG	2 cut(s)	118, 896
Mva1269I	GAATGC	1 cut(s)	407
MvnI	CGCG	1 cut(s)	1021
MwoI	GCNNNNNNNGC	6 cut(s)	113, 122, 237, 482, 608, 940
NciI	CCSGG	2 cut(s)	118, 896
NdeII	GATC	7 cut(s)	163, 210, 515, 627, 673, 898, 904
NlaIII	CATG	4 cut(s)	415, 611, 680, 1084
NlaIV	GGNNCC	7 cut(s)	121, 261, 339, 443, 725, 791, 1104
NmuCI	GTSAC	2 cut(s)	70, 962
NspI	RCATGY	1 cut(s)	1084
PagI	TCATGA	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	694
PfeI	GAWTC	3 cut(s)	96, 527, 565
Pfl23II	CGTACG	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	894
PinAI	ACCGGT	2 cut(s)	574, 1032
Psp124BI	GAGCTC	1 cut(s)	1017
PspLI	CGTACG	1 cut(s)	614
PspN4I	GGNNCC	7 cut(s)	121, 261, 339, 443, 725, 791, 1104
PspPI	GGNCC	3 cut(s)	120, 260, 1035
PstI	CTGCAG	2 cut(s)	841, 933
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	898
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	7 cut(s)	312, 616, 702, 913, 1031, 1085, 1104
RsaNI	GTAC	7 cut(s)	311, 615, 701, 912, 1030, 1084, 1103
RseI	CAYNNNNRTG	2 cut(s)	246, 681
SacI	GAGCTC	1 cut(s)	1017
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	4 cut(s)	200, 288, 297, 858
Sau3AI	GATC	7 cut(s)	163, 210, 515, 627, 673, 898, 904
Sau96I	GGNCC	3 cut(s)	120, 260, 1035
ScrFI	CCNGG	2 cut(s)	118, 896
SduI	GDGCHC	1 cut(s)	1017
SfcI	CTRYAG	5 cut(s)	21, 175, 648, 837, 929
SinI	GGWCC	1 cut(s)	1035
SmiMI	CAYNNNNRTG	2 cut(s)	246, 681
Sse9I	AATT	4 cut(s)	292, 465, 538, 817
SsiI	CCGC	4 cut(s)	123, 231, 263, 341
SspI	AATATT	1 cut(s)	1072
SspMI	CTAG	2 cut(s)	86, 90
SstI	GAGCTC	1 cut(s)	1017
StyD4I	CCNGG	2 cut(s)	116, 894
StyI	CCWWGG	3 cut(s)	34, 532, 825
TaaI	ACNGT	3 cut(s)	179, 550, 728
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	1 cut(s)	492
TasI	AATT	4 cut(s)	292, 465, 538, 817
TatI	WGTACW	4 cut(s)	310, 700, 911, 1083
TauI	GCSGC	3 cut(s)	125, 265, 343
TfiI	GAWTC	3 cut(s)	96, 527, 565
Tru1I	TTAA	4 cut(s)	200, 288, 297, 858
Tru9I	TTAA	4 cut(s)	200, 288, 297, 858
TscAI	CASTG	2 cut(s)	184, 630
TseFI	GTSAC	2 cut(s)	70, 962
TseI	GCWGC	9 cut(s)	17, 421, 476, 839, 842, 928, 931, 1060, 1090
Tsp45I	GTSAC	2 cut(s)	70, 962
TspDTI	ATGAA	2 cut(s)	400, 1033
TspRI	CASTG	2 cut(s)	184, 630
VpaK11BI	GGWCC	1 cut(s)	1035
XapI	RAATTY	1 cut(s)	538
XceI	RCATGY	1 cut(s)	1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	694
XspI	CTAG	2 cut(s)	86, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.