pycom11g23220

Rab3 gtpase-activating protein non-catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0029407
Physical Location & Seq
Reverse (-)
26250958 .. 26254731
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g23220.5

Sequence Viewer

Length: 897 bp
ATGGCTCGGATATTCAGAATATGCTGCACCAGTGGTTTGAAGATACAGAGTCTCAGTTCTGGGATCGAACCCATACTCAAAAAGCGAGGCTCAGATGATTTTGGACATTCCTATGGTAAATTACCTTACCAGTCATGGAGTGTCAGCAAGTATGGTACTTGTGCTGATGCAGCCATTACTGGCATTATGCTTCCGCCACTGATGGAAATCCAGTCAACTGGACATTATTTCTGTGGAATCACCGTTGGAGAGGATGCAGTGATTTCAGCCTTCAGACTATCGGAAGACAATAATAGGTCTTTGGTGGGGGCAATCTTGTCTAAAGTTGTGCCTGTAACATTTTCAACAATAGCTTCATTATCAAAAATGATTTTGGGGAGTGACCAGACTTCACCTAAAAAATCAGAGGAGAAACCTCAACCATTTGCACAAGCTTCACCATTGACATGTTTGAAGGATTTCCCAAGAAAGGGTGAGAAGCTTACCTTATCACCTAGTGGCACATTGGCTGCGATTACAGATTCACTTGGTCGTATATTGCTTTTAGACACTCAAGCACTTGTGATAGTGCGGCTTTGGAAGCGGGATGCTAGTTGCCTATTCGTGGAGATGCTGGTCAAAAAAGATACTGCAGCTTCAAATTCAAGTTACTATGAACCCACGAAGAGTGATTACTGCCTGTGTTTGGTTATTCATGCCCCTCGAAAAGGAATTGTTGAGATTTGGCAGATGAGAACCGGACCAAGGCTTCGAGCATTTCAATGTGCGAAAGGTAGCAAAATACTGCAACCTACGTATAGATTTGGTTCGTCAATAGCCTCTCCTTATGTTCCTTTGGAGGTTTTCTTGTTGAACGGCGACTCAGGTCAAATATCAGTCTTGAGCCGAACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RAB3GAP2_N

Protein Analysis

299

Amino Acids

32.51

Weight (kDa)

9.24

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029407)

Species Orthologous Gene IDs
pyrus_communis pycom11g23220
rosa_multiflora Rmu_sc0040817.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 194, 571, 583
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 1 cut(s) 256
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 6 cut(s) 469, 470, 604, 685, 707, 744
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 7 cut(s) 40, 345, 454, 639, 645, 761, 853
AluBI AGCT 4 cut(s) 353, 434, 481, 635
AluI AGCT 4 cut(s) 353, 434, 481, 635
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 24, 170, 509, 632
ApoI RAATTY 1 cut(s) 640
ArsI GACNNNNNNTTYG 2 cut(s) 732, 764
Asp700I GAANNNNTTC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 5 cut(s) 232, 384, 429, 483, 485
AvaII GGWCC 1 cut(s) 740
BarI GAAGNNNNNNTAC 2 cut(s) 656, 688
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 11, 182, 496, 644
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 871
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 495, 591
BfmI CTRYAG 1 cut(s) 630
BisI GCNGC 5 cut(s) 25, 171, 510, 572, 633
BlsI GCNGC 5 cut(s) 26, 172, 511, 573, 634
Bme18I GGWCC 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 740
BmsI GCATC 4 cut(s) 157, 244, 577, 600
BoxI GACNNNNGTC 1 cut(s) 864
BpiI GAAGAC 1 cut(s) 291
BplI GAGNNNNNCTC 1 cut(s) 874
BpuEI CTTGAG 1 cut(s) 537
BsaAI YACGTR 1 cut(s) 795
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 743
BsaWI WCCGGW 1 cut(s) 737
Bsc4I CCNNNNNNNGG 6 cut(s) 469, 470, 604, 685, 707, 744
Bse1I ACTGG 5 cut(s) 30, 130, 184, 211, 223
Bse8I GATNNNNATC 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 743
BseGI GGATG 2 cut(s) 259, 592
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 6 cut(s) 469, 470, 604, 685, 707, 744
BseMII CTCAG 3 cut(s) 67, 105, 876
BseNI ACTGG 5 cut(s) 30, 130, 184, 211, 223
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 4 cut(s) 11, 182, 496, 644
BsgI GTGCAG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 738
BslI CCNNNNNNNGG 6 cut(s) 469, 470, 604, 685, 707, 744
BsmAI GTCTC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 3 cut(s) 194, 571, 583
BspCNI CTCAG 3 cut(s) 66, 104, 875
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 1 cut(s) 71
BsrI ACTGG 5 cut(s) 30, 130, 184, 211, 223
BssECI CCNNGG 1 cut(s) 743
BssMI GATC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 743
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 795
BstDEI CTNAG 3 cut(s) 53, 91, 862
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 2 cut(s) 259, 592
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 170, 580
BstNSI RCATGY 1 cut(s) 450
BstPAI GACNNNNGTC 1 cut(s) 864
BstSFI CTRYAG 1 cut(s) 630
BstSNI TACGTA 1 cut(s) 795
BstV1I GCAGC 4 cut(s) 11, 182, 496, 644
BstV2I GAAGAC 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 218
BtsCI GGATG 2 cut(s) 259, 592
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 3 cut(s) 37, 197, 264
Cfr13I GGNCC 1 cut(s) 740
Csp6I GTAC 1 cut(s) 156
CviAII CATG 3 cut(s) 135, 447, 695
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 3 cut(s) 53, 91, 862
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
DraIII CACNNNGTG 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
EciI GGCGGA 1 cut(s) 183
Eco105I TACGTA 1 cut(s) 795
Eco130I CCWWGG 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 740
Eco57I CTGAAG 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 743
FaeI CATG 3 cut(s) 138, 450, 698
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FatI CATG 3 cut(s) 134, 446, 694
FauI CCCGC 1 cut(s) 576
Fnu4HI GCNGC 5 cut(s) 25, 171, 510, 572, 633
FokI GGATG 2 cut(s) 266, 599
Fsp4HI GCNGC 5 cut(s) 25, 171, 510, 572, 633
FspBI CTAG 2 cut(s) 495, 591
GluI GCNGC 5 cut(s) 25, 171, 510, 572, 633
HapII CCGG 1 cut(s) 738
Hin1II CATG 3 cut(s) 138, 450, 698
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HindIII AAGCTT 2 cut(s) 432, 479
HinfI GANTC 4 cut(s) 49, 237, 521, 860
HpaII CCGG 1 cut(s) 738
HphI GGTGA 5 cut(s) 232, 384, 429, 483, 485
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 6 cut(s) 9, 17, 94, 275, 283, 406
Hpy188III TCNNGA 1 cut(s) 880
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 2 cut(s) 280, 448
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 794
HpyCH4V TGCA 6 cut(s) 27, 170, 257, 428, 632, 787
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 580
HpyF3I CTNAG 3 cut(s) 53, 91, 862
HpySE526I ACGT 1 cut(s) 794
Hsp92II CATG 3 cut(s) 138, 450, 698
Kzo9I GATC 1 cut(s) 63
Lsp1109I GCAGC 4 cut(s) 11, 182, 496, 644
LweI GCATC 4 cut(s) 157, 244, 577, 600
MaeI CTAG 2 cut(s) 495, 591
MaeII ACGT 1 cut(s) 794
MaeIII GTNAC 3 cut(s) 334, 380, 647
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 3 cut(s) 52, 296, 676
MluCI AATT 3 cut(s) 119, 640, 711
MlyI GAGTC 2 cut(s) 58, 854
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 7 cut(s) 80, 244, 400, 426, 711, 829, 832
MroXI GAANNNNTTC 1 cut(s) 458
MslI CAYNNNNRTG 3 cut(s) 111, 445, 760
MspI CCGG 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 170, 580
NdeII GATC 1 cut(s) 63
NlaIII CATG 3 cut(s) 138, 450, 698
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 450
PciI ACATGT 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 2 cut(s) 237, 521
PkrI GCNGC 5 cut(s) 26, 172, 511, 573, 634
PleI GAGTC 2 cut(s) 57, 854
PpsI GAGTC 2 cut(s) 57, 854
Ppu21I YACGTR 1 cut(s) 795
PscI ACATGT 1 cut(s) 446
PshAI GACNNNNGTC 1 cut(s) 864
PspPI GGNCC 1 cut(s) 740
PstI CTGCAG 1 cut(s) 634
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 3 cut(s) 111, 445, 760
SatI GCNGC 5 cut(s) 25, 171, 510, 572, 633
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 740
SchI GAGTC 2 cut(s) 58, 854
SfaNI GCATC 4 cut(s) 157, 244, 577, 600
SfcI CTRYAG 1 cut(s) 630
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 3 cut(s) 111, 445, 760
SmlI CTYRAG 2 cut(s) 552, 880
SmoI CTYRAG 2 cut(s) 552, 880
SnaBI TACGTA 1 cut(s) 795
Sse9I AATT 3 cut(s) 119, 640, 711
SsiI CCGC 3 cut(s) 194, 571, 583
SspMI CTAG 2 cut(s) 495, 591
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 797
TaqI TCGA 3 cut(s) 66, 703, 751
TasI AATT 3 cut(s) 119, 640, 711
TauI GCSGC 1 cut(s) 574
TfiI GAWTC 2 cut(s) 237, 521
TscAI CASTG 3 cut(s) 37, 204, 264
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 4 cut(s) 24, 170, 509, 632
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 345, 669, 683
TspRI CASTG 3 cut(s) 37, 204, 264
VpaK11BI GGWCC 1 cut(s) 740
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 1 cut(s) 640
XceI RCATGY 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 2 cut(s) 495, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.