Rmu_sc0040817.1_g000001

Rab3 gtpase-activating protein non-catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040817.1
OG0029407
Physical Location & Seq
Forward (+)
1 .. 1990
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040817.1_g000001.1.cds

Sequence Viewer

Length: 470 bp
cttctccattgacatgtttgaaggacttcccaagaaagggtgagaagcttaccttatcacctagtggcacattggctgcaattacagattcacttggtcgcatattgcttttagacactcaagcacttgtcatagtgcgactgtggaagggatatcgggatgctagttgcctattcacggagatgctggtcaataaaaacactgcagcttctagttcccgttattatgaacctaccaagagtgattactgcctgtgtttggtcattcatgcccctagaaaaggaattattgagatttggcagatgagaactggaccaaggcttcgaagttttgtgtgtgccaaaggtagcaagatactgcaacctacttacagatttggatcgtcaatagcctctccttatgttcctttggaggttttcttgttgaacggcgactctggtcagatatcagttttaaatcgaactctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RAB3GAP2_N

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

9.57

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029407)

Species Orthologous Gene IDs
pyrus_communis pycom11g23220
rosa_multiflora Rmu_sc0040817.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 387
AdeI CACNNNGTG 1 cut(s) 64
AfiI CCNNNNNNNGG 5 cut(s) 36, 37, 177, 258, 280
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 2 cut(s) 21, 426
AluBI AGCT 2 cut(s) 48, 208
AluI AGCT 2 cut(s) 48, 208
AlwI GGATC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 76, 205
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 50, 52
AsuII TTCGAA 1 cut(s) 324
AvaII GGWCC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 63, 217
BceAI ACGGC 1 cut(s) 444
BfaI CTAG 4 cut(s) 62, 164, 212, 275
BfmI CTRYAG 1 cut(s) 203
BisI GCNGC 2 cut(s) 77, 206
BlsI GCNGC 2 cut(s) 78, 207
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmsI GCATC 2 cut(s) 150, 173
BoxI GACNNNNGTC 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 37, 177, 258, 280
Bse1I ACTGG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 165
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 5 cut(s) 36, 37, 177, 258, 280
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 63, 217
BslI CCNNNNNNNGG 5 cut(s) 36, 37, 177, 258, 280
Bsp119I TTCGAA 1 cut(s) 324
Bsp143I GATC 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 207
BspPI GGATC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 324
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 324
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 165
BstKTI GATC 1 cut(s) 382
BstMBI GATC 1 cut(s) 379
BstNSI RCATGY 1 cut(s) 17
BstPAI GACNNNNGTC 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 63, 217
BtsCI GGATG 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 313
CviAII CATG 2 cut(s) 14, 268
CviJI RGCY 5 cut(s) 48, 76, 208, 321, 391
CviKI_1 RGCY 5 cut(s) 48, 76, 208, 321, 391
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
DraI TTTAAA 1 cut(s) 455
DraIII CACNNNGTG 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 316
Eco32I GATATC 2 cut(s) 154, 446
Eco47I GGWCC 1 cut(s) 313
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoRV GATATC 2 cut(s) 154, 446
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 2 cut(s) 17, 271
FaiI YATR 6 cut(s) 15, 103, 133, 227, 269, 401
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FatI CATG 2 cut(s) 13, 267
Fnu4HI GCNGC 2 cut(s) 77, 206
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 77, 206
FspBI CTAG 4 cut(s) 62, 164, 212, 275
GluI GCNGC 2 cut(s) 77, 206
Hin1II CATG 2 cut(s) 17, 271
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 2 cut(s) 88, 433
HphI GGTGA 2 cut(s) 50, 52
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 15, 141
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 79, 205, 360
Hsp92II CATG 2 cut(s) 17, 271
Kzo9I GATC 1 cut(s) 379
LpnPI CCDG 4 cut(s) 172, 265, 296, 422
Lsp1109I GCAGC 2 cut(s) 63, 217
LweI GCATC 2 cut(s) 150, 173
MaeI CTAG 4 cut(s) 62, 164, 212, 275
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MluCI AATT 2 cut(s) 80, 284
MlyI GAGTC 1 cut(s) 427
MnlI CCTC 2 cut(s) 402, 405
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 2 cut(s) 454, 468
MslI CAYNNNNRTG 2 cut(s) 12, 181
NdeII GATC 1 cut(s) 379
NlaIII CATG 2 cut(s) 17, 271
NspI RCATGY 1 cut(s) 17
NspV TTCGAA 1 cut(s) 324
PciI ACATGT 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 78, 207
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PscI ACATGT 1 cut(s) 13
PshAI GACNNNNGTC 1 cut(s) 437
PspPI GGNCC 1 cut(s) 313
PstI CTGCAG 1 cut(s) 207
RseI CAYNNNNRTG 2 cut(s) 12, 181
SaqAI TTAA 2 cut(s) 454, 468
SatI GCNGC 2 cut(s) 77, 206
Sau3AI GATC 1 cut(s) 379
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 427
SetI ASST 8 cut(s) 50, 55, 63, 210, 234, 348, 366, 416
SfaNI GCATC 2 cut(s) 150, 173
SfcI CTRYAG 1 cut(s) 203
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 12, 181
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 80, 284
SspMI CTAG 4 cut(s) 62, 164, 212, 275
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 324, 459
TasI AATT 2 cut(s) 80, 284
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 454, 468
Tru9I TTAA 2 cut(s) 454, 468
TscAI CASTG 1 cut(s) 207
TseI GCWGC 2 cut(s) 76, 205
TspDTI ATGAA 2 cut(s) 242, 256
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 313
XagI CCTNNNNNAGG 1 cut(s) 278
XceI RCATGY 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 4 cut(s) 62, 164, 212, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.