pycom11g23220

Rab3 gtpase-activating protein non-catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0029407
Physical Location & Seq
Reverse (-)
26250958 .. 26254731
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 897 bp
ATGGCTCGGATATTCAGAATATGCTGCACCAGTGGTTTGAAGATACAGAGTCTCAGTTCTGGGATCGAACCCATACTCAAAAAGCGAGGCTCAGATGATTTTGGACATTCCTATGGTAAATTACCTTACCAGTCATGGAGTGTCAGCAAGTATGGTACTTGTGCTGATGCAGCCATTACTGGCATTATGCTTCCGCCACTGATGGAAATCCAGTCAACTGGACATTATTTCTGTGGAATCACCGTTGGAGAGGATGCAGTGATTTCAGCCTTCAGACTATCGGAAGACAATAATAGGTCTTTGGTGGGGGCAATCTTGTCTAAAGTTGTGCCTGTAACATTTTCAACAATAGCTTCATTATCAAAAATGATTTTGGGGAGTGACCAGACTTCACCTAAAAAATCAGAGGAGAAACCTCAACCATTTGCACAAGCTTCACCATTGACATGTTTGAAGGATTTCCCAAGAAAGGGTGAGAAGCTTACCTTATCACCTAGTGGCACATTGGCTGCGATTACAGATTCACTTGGTCGTATATTGCTTTTAGACACTCAAGCACTTGTGATAGTGCGGCTTTGGAAGCGGGATGCTAGTTGCCTATTCGTGGAGATGCTGGTCAAAAAAGATACTGCAGCTTCAAATTCAAGTTACTATGAACCCACGAAGAGTGATTACTGCCTGTGTTTGGTTATTCATGCCCCTCGAAAAGGAATTGTTGAGATTTGGCAGATGAGAACCGGACCAAGGCTTCGAGCATTTCAATGTGCGAAAGGTAGCAAAATACTGCAACCTACGTATAGATTTGGTTCGTCAATAGCCTCTCCTTATGTTCCTTTGGAGGTTTTCTTGTTGAACGGCGACTCAGGTCAAATATCAGTCTTGAGCCGAACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RAB3GAP2_N

Protein Analysis

299

Amino Acids

32.51

Weight (kDa)

9.24

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RAB3GAP2_N PF14655 7 - 262 4.6e-80 Rab3 GTPase-activating protein regulatory subunit N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029407)

Species Orthologous Gene IDs
pyrus_communis pycom11g23220
rosa_multiflora Rmu_sc0040817.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 194, 571, 583
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 1 cut(s) 256
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 6 cut(s) 469, 470, 604, 685, 707, 744
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 7 cut(s) 40, 345, 454, 639, 645, 761, 853
AluBI AGCT 4 cut(s) 353, 434, 481, 635
AluI AGCT 4 cut(s) 353, 434, 481, 635
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 24, 170, 509, 632
ApoI RAATTY 1 cut(s) 640
ArsI GACNNNNNNTTYG 2 cut(s) 732, 764
Asp700I GAANNNNTTC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 5 cut(s) 232, 384, 429, 483, 485
AvaII GGWCC 1 cut(s) 740
BarI GAAGNNNNNNTAC 2 cut(s) 656, 688
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 11, 182, 496, 644
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 871
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 495, 591
BfmI CTRYAG 1 cut(s) 630
BisI GCNGC 5 cut(s) 25, 171, 510, 572, 633
BlsI GCNGC 5 cut(s) 26, 172, 511, 573, 634
Bme18I GGWCC 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 740
BmsI GCATC 4 cut(s) 157, 244, 577, 600
BoxI GACNNNNGTC 1 cut(s) 864
BpiI GAAGAC 1 cut(s) 291
BplI GAGNNNNNCTC 1 cut(s) 874
BpuEI CTTGAG 1 cut(s) 537
BsaAI YACGTR 1 cut(s) 795
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 743
BsaWI WCCGGW 1 cut(s) 737
Bsc4I CCNNNNNNNGG 6 cut(s) 469, 470, 604, 685, 707, 744
Bse1I ACTGG 5 cut(s) 30, 130, 184, 211, 223
Bse8I GATNNNNATC 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 743
BseGI GGATG 2 cut(s) 259, 592
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 6 cut(s) 469, 470, 604, 685, 707, 744
BseMII CTCAG 3 cut(s) 67, 105, 876
BseNI ACTGG 5 cut(s) 30, 130, 184, 211, 223
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 4 cut(s) 11, 182, 496, 644
BsgI GTGCAG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 738
BslI CCNNNNNNNGG 6 cut(s) 469, 470, 604, 685, 707, 744
BsmAI GTCTC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 3 cut(s) 194, 571, 583
BspCNI CTCAG 3 cut(s) 66, 104, 875
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 1 cut(s) 71
BsrI ACTGG 5 cut(s) 30, 130, 184, 211, 223
BssECI CCNNGG 1 cut(s) 743
BssMI GATC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 743
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 795
BstDEI CTNAG 3 cut(s) 53, 91, 862
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 2 cut(s) 259, 592
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 170, 580
BstNSI RCATGY 1 cut(s) 450
BstPAI GACNNNNGTC 1 cut(s) 864
BstSFI CTRYAG 1 cut(s) 630
BstSNI TACGTA 1 cut(s) 795
BstV1I GCAGC 4 cut(s) 11, 182, 496, 644
BstV2I GAAGAC 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 218
BtsCI GGATG 2 cut(s) 259, 592
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 3 cut(s) 37, 197, 264
Cfr13I GGNCC 1 cut(s) 740
Csp6I GTAC 1 cut(s) 156
CviAII CATG 3 cut(s) 135, 447, 695
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 3 cut(s) 53, 91, 862
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
DraIII CACNNNGTG 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
EciI GGCGGA 1 cut(s) 183
Eco105I TACGTA 1 cut(s) 795
Eco130I CCWWGG 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 740
Eco57I CTGAAG 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 743
FaeI CATG 3 cut(s) 138, 450, 698
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FatI CATG 3 cut(s) 134, 446, 694
FauI CCCGC 1 cut(s) 576
Fnu4HI GCNGC 5 cut(s) 25, 171, 510, 572, 633
FokI GGATG 2 cut(s) 266, 599
Fsp4HI GCNGC 5 cut(s) 25, 171, 510, 572, 633
FspBI CTAG 2 cut(s) 495, 591
GluI GCNGC 5 cut(s) 25, 171, 510, 572, 633
HapII CCGG 1 cut(s) 738
Hin1II CATG 3 cut(s) 138, 450, 698
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HindIII AAGCTT 2 cut(s) 432, 479
HinfI GANTC 4 cut(s) 49, 237, 521, 860
HpaII CCGG 1 cut(s) 738
HphI GGTGA 5 cut(s) 232, 384, 429, 483, 485
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 6 cut(s) 9, 17, 94, 275, 283, 406
Hpy188III TCNNGA 1 cut(s) 880
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 2 cut(s) 280, 448
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 794
HpyCH4V TGCA 6 cut(s) 27, 170, 257, 428, 632, 787
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 580
HpyF3I CTNAG 3 cut(s) 53, 91, 862
HpySE526I ACGT 1 cut(s) 794
Hsp92II CATG 3 cut(s) 138, 450, 698
Kzo9I GATC 1 cut(s) 63
Lsp1109I GCAGC 4 cut(s) 11, 182, 496, 644
LweI GCATC 4 cut(s) 157, 244, 577, 600
MaeI CTAG 2 cut(s) 495, 591
MaeII ACGT 1 cut(s) 794
MaeIII GTNAC 3 cut(s) 334, 380, 647
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 3 cut(s) 52, 296, 676
MluCI AATT 3 cut(s) 119, 640, 711
MlyI GAGTC 2 cut(s) 58, 854
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 7 cut(s) 80, 244, 400, 426, 711, 829, 832
MroXI GAANNNNTTC 1 cut(s) 458
MslI CAYNNNNRTG 3 cut(s) 111, 445, 760
MspI CCGG 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 170, 580
NdeII GATC 1 cut(s) 63
NlaIII CATG 3 cut(s) 138, 450, 698
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 450
PciI ACATGT 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 2 cut(s) 237, 521
PkrI GCNGC 5 cut(s) 26, 172, 511, 573, 634
PleI GAGTC 2 cut(s) 57, 854
PpsI GAGTC 2 cut(s) 57, 854
Ppu21I YACGTR 1 cut(s) 795
PscI ACATGT 1 cut(s) 446
PshAI GACNNNNGTC 1 cut(s) 864
PspPI GGNCC 1 cut(s) 740
PstI CTGCAG 1 cut(s) 634
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 3 cut(s) 111, 445, 760
SatI GCNGC 5 cut(s) 25, 171, 510, 572, 633
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 740
SchI GAGTC 2 cut(s) 58, 854
SfaNI GCATC 4 cut(s) 157, 244, 577, 600
SfcI CTRYAG 1 cut(s) 630
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 3 cut(s) 111, 445, 760
SmlI CTYRAG 2 cut(s) 552, 880
SmoI CTYRAG 2 cut(s) 552, 880
SnaBI TACGTA 1 cut(s) 795
Sse9I AATT 3 cut(s) 119, 640, 711
SsiI CCGC 3 cut(s) 194, 571, 583
SspMI CTAG 2 cut(s) 495, 591
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 797
TaqI TCGA 3 cut(s) 66, 703, 751
TasI AATT 3 cut(s) 119, 640, 711
TauI GCSGC 1 cut(s) 574
TfiI GAWTC 2 cut(s) 237, 521
TscAI CASTG 3 cut(s) 37, 204, 264
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 4 cut(s) 24, 170, 509, 632
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 345, 669, 683
TspRI CASTG 3 cut(s) 37, 204, 264
VpaK11BI GGWCC 1 cut(s) 740
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 1 cut(s) 640
XceI RCATGY 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 2 cut(s) 495, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.