pycom11g26570

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
29096781 .. 29097168
388 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGGCATTGGATTCTAGCATTTCCTCATGTCATCATCTAATATCTTACCCTCTTGGCCAAACAAACAAAGAGACTACTATCAAAGTATCAAGAATGAAGCCCCAAAACATCTGTGGGGAGAGTTCTCTGTGTGACGAATCGACGAGGGGTTTCCAAGAAACGCTCCGTCAGGCTTATCAGGCCGCCATGGTGGTTATGGCTAGGCATGGAGGTCATAATAATGGTAGGGGTCTCTTAGTTTCCAAACCAATTGGGGGAAGAAGAAGATGGAACAACTATGCAGAAGACCCCATTAGAACTCTCATATTCTTGGGGTCTTGGAGCCACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.27

Weight (kDa)

9.5

Isoelectric Point (pI)

63.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020410)

Species Orthologous Gene IDs
prunus_persica Prupe.8G257300_v2.0.a1
pyrus_communis pycom11g26570
rosa_roxburghii Rroxscaffold_7G00174200
rosa_samantha Rh6BG355600 Rh6CG361700 Rh6DG348800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AcoI YGGCCR 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 254
Alw26I GTCTC 2 cut(s) 65, 236
AoxI GGCC 2 cut(s) 55, 180
BalI TGGCCA 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 291
BccI CCATC 1 cut(s) 261
BcoDI GTCTC 2 cut(s) 65, 236
BfaI CTAG 3 cut(s) 15, 201, 331
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 254
BshFI GGCC 2 cut(s) 57, 182
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 65, 236
BsnI GGCC 2 cut(s) 57, 182
Bso31I GGTCTC 1 cut(s) 236
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 1 cut(s) 183
BspANI GGCC 2 cut(s) 57, 182
BspLI GGNNCC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 186
BstMAI GTCTC 2 cut(s) 65, 236
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 57, 182
BtgI CCRYGG 1 cut(s) 186
CviAII CATG 3 cut(s) 27, 187, 206
CviJI RGCY 6 cut(s) 57, 100, 173, 182, 200, 324
CviKI_1 RGCY 6 cut(s) 57, 100, 173, 182, 200, 324
DdeI CTNAG 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 30, 190, 209
FaiI YATR 7 cut(s) 28, 188, 197, 207, 216, 279, 305
FatI CATG 3 cut(s) 26, 186, 205
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 3 cut(s) 15, 201, 331
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 2 cut(s) 57, 182
Hin1II CATG 3 cut(s) 30, 190, 209
HinfI GANTC 2 cut(s) 11, 137
Hpy188III TCNNGA 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 235
Hsp92II CATG 3 cut(s) 30, 190, 209
LmnI GCTCC 2 cut(s) 168, 321
LpnPI CCDG 2 cut(s) 155, 164
MaeI CTAG 3 cut(s) 15, 201, 331
MaeIII GTNAC 1 cut(s) 131
MboII GAAGA 4 cut(s) 270, 273, 276, 296
MfeI CAATTG 1 cut(s) 249
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 57
MnlI CCTC 4 cut(s) 34, 60, 138, 203
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 57
MunI CAATTG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 179
NcoI CCATGG 1 cut(s) 186
NlaIII CATG 3 cut(s) 30, 190, 209
NlaIV GGNNCC 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 11, 137
PkrI GCNGC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 219
SatI GCNGC 1 cut(s) 183
SetI ASST 2 cut(s) 214, 332
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 1 cut(s) 249
SsiI CCGC 1 cut(s) 183
SspMI CTAG 3 cut(s) 15, 201, 331
StyI CCWWGG 1 cut(s) 186
TaqI TCGA 1 cut(s) 140
TasI AATT 1 cut(s) 249
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 2 cut(s) 11, 137
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 2 cut(s) 110, 193
XspI CTAG 3 cut(s) 15, 201, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.