Rroxscaffold_7G00174200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0020410
Physical Location & Seq
Reverse (-)
13936722 .. 13936955
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174200.1

Sequence Viewer

Length: 234 bp
ATGAAACCTCAGAACATCTGTGGGGAGGGTTTACTCTGCGAGGAATCAAAGAGAGGTTTCAGACAAAAGCTTGGGCAGGCATATGAGGCAGCTCTGTTAGTCATGGCTAGGAGCGGAGCTCAGAAAGGAAAGGGTGTCTTAATCTCAAAATCGATTGAGAGACGAAGGTGGAACTACTCTGCAGAAGAGCCAATAAGAACTCTGATGTTCTTGGGTCCATGGAGCCACACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.71

Weight (kDa)

9.83

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020410)

Species Orthologous Gene IDs
prunus_persica Prupe.8G257300_v2.0.a1
pyrus_communis pycom11g26570
rosa_roxburghii Rroxscaffold_7G00174200
rosa_samantha Rh6BG355600 Rh6CG361700 Rh6DG348800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 1 cut(s) 114
AluBI AGCT 3 cut(s) 70, 92, 119
AluI AGCT 3 cut(s) 70, 92, 119
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 216, 224
BplI GAGNNNNNCTC 2 cut(s) 103, 135
Bsa29I ATCGAT 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 218
BseMII CTCAG 2 cut(s) 23, 134
BseXI GCAGC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 121
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 1 cut(s) 114
BspCNI CTCAG 2 cut(s) 22, 133
BspDI ATCGAT 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 216, 224
BspMAI CTGCAG 1 cut(s) 184
BspQI GCTCTTC 1 cut(s) 180
BsrBI CCGCTC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 9, 120, 231
BstDSI CCRYGG 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 215
ClaI ATCGAT 1 cut(s) 152
CviAII CATG 2 cut(s) 103, 219
CviJI RGCY 6 cut(s) 70, 92, 107, 119, 190, 225
CviKI_1 RGCY 6 cut(s) 70, 92, 107, 119, 190, 225
DdeI CTNAG 3 cut(s) 9, 120, 231
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 218
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 2 cut(s) 106, 222
FaiI YATR 4 cut(s) 82, 84, 104, 220
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 2 cut(s) 102, 218
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 90
Hin1II CATG 2 cut(s) 106, 222
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 4 cut(s) 12, 62, 123, 204
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 9, 120, 231
Hsp92II CATG 2 cut(s) 106, 222
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 3 cut(s) 111, 116, 222
LpnPI CCDG 1 cut(s) 62
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 1 cut(s) 108
MbiI CCGCTC 1 cut(s) 114
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 121
MnlI CCTC 5 cut(s) 18, 19, 34, 47, 79
MseI TTAA 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 86
NcoI CCATGG 1 cut(s) 218
NdeI CATATG 1 cut(s) 82
NlaIII CATG 2 cut(s) 106, 222
NlaIV GGNNCC 2 cut(s) 216, 224
PciSI GCTCTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 216, 224
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 184
SacI GAGCTC 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 121
SetI ASST 6 cut(s) 10, 58, 72, 94, 121, 170
SfcI CTRYAG 1 cut(s) 180
SgeI CNNG 6 cut(s) 52, 83, 89, 115, 120, 223
SinI GGWCC 1 cut(s) 215
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 121
StyI CCWWGG 1 cut(s) 218
TaqI TCGA 1 cut(s) 152
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 215
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.