Rh6CG361700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0020410
Physical Location & Seq
Forward (+)
55050175 .. 55055580
5406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG361700.1

Sequence Viewer

Length: 360 bp
ATGCCGCTTAGTGTCTTCTTTGGCAACGTGGTTCTTGACAGCTTTGAGAAGGTGGCGAGACATCCTAGGCCATTCCCAATTCCAATATCCCAGTCACTTGGCCTAACAAGCACAGAATATAGAACAATGAAACCTCAGAACATCTGTGGGGAGGGTTTTCTCTGCGAGGAATCAAAGAGAGGTTTCAGACAAAAGCTTGGGCAGGCATATGAGGCAGCTCTGTTAGTCATGGCTAGGAGCGGAGCTCAGAAAGGAAAGGGTCTCTTAATCTCAAAATCGATTGAGAGACGAAGGTGGAACTACTCTGCAGAAGAGCCAATAAGAACTCTGATGTTCTTGGGTCCATGGAGCCACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

9.86

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020410)

Species Orthologous Gene IDs
prunus_persica Prupe.8G257300_v2.0.a1
pyrus_communis pycom11g26570
rosa_roxburghii Rroxscaffold_7G00174200
rosa_samantha Rh6BG355600 Rh6CG361700 Rh6DG348800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 240
AciI CCGC 2 cut(s) 5, 240
AluBI AGCT 4 cut(s) 42, 196, 218, 245
AluI AGCT 4 cut(s) 42, 196, 218, 245
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 3 cut(s) 52, 266, 280
AoxI GGCC 2 cut(s) 68, 100
ApeKI GCWGC 1 cut(s) 215
AspA2I CCTAGG 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 341
AvaII GGWCC 1 cut(s) 341
AvrII CCTAGG 1 cut(s) 65
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 227
BcoDI GTCTC 3 cut(s) 52, 266, 280
BfaI CTAG 3 cut(s) 66, 234, 358
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 2 cut(s) 5, 216
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 2 cut(s) 6, 217
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 2 cut(s) 342, 350
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 7
BplI GAGNNNNNCTC 2 cut(s) 229, 261
Bsa29I ATCGAT 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 65, 344
Bse1I ACTGG 1 cut(s) 91
BseCI ATCGAT 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 65, 344
BseGI GGATG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 149, 260
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 2 cut(s) 70, 102
BshVI ATCGAT 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 247
BsmAI GTCTC 3 cut(s) 52, 266, 280
BsmBI CGTCTC 1 cut(s) 280
BsnI GGCC 2 cut(s) 70, 102
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 247
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 2 cut(s) 5, 240
BspANI GGCC 2 cut(s) 70, 102
BspCNI CTCAG 2 cut(s) 148, 259
BspDI ATCGAT 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 342, 350
BspMAI CTGCAG 1 cut(s) 310
BspQI GCTCTTC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 65, 344
BssT1I CCWWGG 2 cut(s) 65, 344
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 8, 135, 246
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 61
BstMAI GTCTC 3 cut(s) 52, 266, 280
BstMWI GCNNNNNNNGC 2 cut(s) 108, 212
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 278
BsuRI GGCC 2 cut(s) 70, 102
BsuTUI ATCGAT 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 341
ClaI ATCGAT 1 cut(s) 278
CviAII CATG 2 cut(s) 229, 345
CviJI RGCY 9 cut(s) 42, 70, 102, 196, 218, 233, 245, 316, 351
CviKI_1 RGCY 9 cut(s) 42, 70, 102, 196, 218, 233, 245, 316, 351
DdeI CTNAG 3 cut(s) 8, 135, 246
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 65, 344
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 245
EcoT14I CCWWGG 2 cut(s) 65, 344
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 65, 344
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 2 cut(s) 232, 348
FaiI YATR 5 cut(s) 120, 208, 210, 230, 346
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 2 cut(s) 228, 344
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 5, 216
FokI GGATG 1 cut(s) 48
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 2 cut(s) 5, 216
FspBI CTAG 3 cut(s) 66, 234, 358
GluI GCNGC 2 cut(s) 5, 216
HaeIII GGCC 2 cut(s) 70, 102
Hin1II CATG 2 cut(s) 232, 348
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 1 cut(s) 170
Hpy188I TCNGA 4 cut(s) 138, 188, 249, 330
Hpy188III TCNNGA 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 43, 285
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 212
HpyF3I CTNAG 3 cut(s) 8, 135, 246
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 232, 348
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 3 cut(s) 237, 242, 348
LpnPI CCDG 2 cut(s) 104, 188
Lsp1109I GCAGC 1 cut(s) 227
MaeI CTAG 3 cut(s) 66, 234, 358
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 93
MbiI CCGCTC 1 cut(s) 240
MboII GAAGA 2 cut(s) 7, 323
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 78
MnlI CCTC 5 cut(s) 144, 145, 160, 173, 205
MseI TTAA 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 108, 212
NcoI CCATGG 1 cut(s) 344
NdeI CATATG 1 cut(s) 208
NlaIII CATG 2 cut(s) 232, 348
NlaIV GGNNCC 2 cut(s) 342, 350
NmuCI GTSAC 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 6, 217
Psp124BI GAGCTC 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 342, 350
PspPI GGNCC 1 cut(s) 341
PstI CTGCAG 1 cut(s) 310
SacI GAGCTC 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 2 cut(s) 5, 216
Sau96I GGNCC 1 cut(s) 341
SduI GDGCHC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 341
Sse9I AATT 1 cut(s) 78
SsiI CCGC 2 cut(s) 5, 240
SspMI CTAG 3 cut(s) 66, 234, 358
SstI GAGCTC 1 cut(s) 247
StyI CCWWGG 2 cut(s) 65, 344
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 278
TasI AATT 1 cut(s) 78
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 341
XmaJI CCTAGG 1 cut(s) 65
XspI CTAG 3 cut(s) 66, 234, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.