Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0028912

Physical Location & Seq

Genomic Coordinates Forward (+)

29410349 .. 29411078

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTTCAGCAGCAGAAGCTTCACCGGTTAATAGAAAGAGGGGAAGGAAGTCAAGTGAAGAGGGGGGAGGTGGGACTCAACTGGGTCCGAGAAAATGAAGGCCACCGAAATGTATGTGCTTCACTTTTGAGGGACTGCACTGCACATGTATGTGCTTCACTTTTTCTTTATTGGACCCTCCCATCTATGGCTGATAACACTGAAGGAGTTGGGGGAACTGAACCAGATTTTTCAGAAGCTCAGCTACTAGATGATGGCGTCGTGGTTCCTCTAGGAAAGCCGAAAGAGAATACAAGCCGCCCGAAGGTAGAAATACATCGTTTTCCAGAACTTGTTAAACGAGGCAGGCAGCTTCATTGTAAATTGATTTTGTTTATGTGCTTCATTCAGGTTTCATTACAGTACAATGAGTACATGGTTTACAATGTGAAACGGATTAGAATGCGCTACGTTGTTCAAGTGAATTTCAATTTGAAGATACGATTAGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

PARP PARP_reg SAP WGR

Protein Analysis

165

Amino Acids

18.98

Weight (kDa)

9.2

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	61 - 156	9.2e-07	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028912)

Species	Orthologous Gene IDs
malus_domestica	MD11G1308700.v1.1
pyrus_communis	pycom11g27000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	404, 413
AfiI	CCNNNNNNNGG	2 cut(s)	187, 304
AflIII	ACRYGT	1 cut(s)	145
AgeI	ACCGGT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	458, 469, 475
AluBI	AGCT	4 cut(s)	19, 239, 244, 352
AluI	AGCT	4 cut(s)	19, 239, 244, 352
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	10, 349
ApoI	RAATTY	1 cut(s)	463
AsiGI	ACCGGT	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	85, 174
AsuHPI	GGTGA	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	85, 174
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbvI	GCAGC	2 cut(s)	22, 361
BccI	CCATC	2 cut(s)	190, 248
BfaI	CTAG	2 cut(s)	248, 272
BisI	GCNGC	3 cut(s)	11, 298, 350
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	3 cut(s)	12, 299, 351
Bme18I	GGWCC	2 cut(s)	85, 174
BmgT120I	GGNCC	2 cut(s)	85, 174
BmiI	GGNNCC	3 cut(s)	86, 176, 267
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 304
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	187, 304
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	22, 361
BsgI	GTGCAG	2 cut(s)	121, 126
BshFI	GGCC	1 cut(s)	102
BshTI	ACCGGT	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	2 cut(s)	87, 146
BslI	CCNNNNNNNGG	2 cut(s)	187, 304
BsmFI	GGGAC	2 cut(s)	87, 146
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	102
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	86, 176, 267
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	22, 361
BsuRI	GGCC	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 198
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	85, 174
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	403, 412
CspAI	ACCGGT	1 cut(s)	24
CviAII	CATG	2 cut(s)	146, 415
CviJI	RGCY	8 cut(s)	19, 102, 191, 239, 244, 280, 297, 352
CviKI_1	RGCY	8 cut(s)	19, 102, 191, 239, 244, 280, 297, 352
CviQI	GTAC	2 cut(s)	403, 412
DdeI	CTNAG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	85, 174
Eco57I	CTGAAG	1 cut(s)	222
FaeI	CATG	2 cut(s)	149, 418
FaiI	YATR	6 cut(s)	115, 147, 151, 188, 377, 416
FaqI	GGGAC	2 cut(s)	87, 146
FatI	CATG	2 cut(s)	145, 414
Fnu4HI	GCNGC	3 cut(s)	11, 298, 350
Fsp4HI	GCNGC	3 cut(s)	11, 298, 350
FspBI	CTAG	2 cut(s)	248, 272
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	3 cut(s)	11, 298, 350
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	25
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	149, 418
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	89, 235
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	4 cut(s)	38, 92, 197, 298
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	2 cut(s)	138, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	149, 418
HspAI	GCGC	1 cut(s)	445
LpnPI	CCDG	6 cut(s)	38, 67, 237, 331, 339, 374
Lsp1109I	GCAGC	2 cut(s)	22, 361
MaeI	CTAG	2 cut(s)	248, 272
MaeII	ACGT	1 cut(s)	450
MboII	GAAGA	2 cut(s)	70, 487
MluCI	AATT	3 cut(s)	362, 463, 469
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	7 cut(s)	32, 54, 61, 123, 188, 279, 335
MseI	TTAA	2 cut(s)	29, 336
MslI	CAYNNNNRTG	3 cut(s)	108, 148, 150
MspI	CCGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	149, 418
NlaIV	GGNNCC	3 cut(s)	86, 176, 267
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	447
PinAI	ACCGGT	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	12, 299, 351
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PscI	ACATGT	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	86, 176, 267
PspPI	GGNCC	2 cut(s)	85, 174
RsaI	GTAC	2 cut(s)	404, 413
RsaNI	GTAC	2 cut(s)	403, 412
RseI	CAYNNNNRTG	3 cut(s)	108, 148, 150
SaqAI	TTAA	2 cut(s)	29, 336
SatI	GCNGC	3 cut(s)	11, 298, 350
Sau96I	GGNCC	2 cut(s)	85, 174
SchI	GAGTC	1 cut(s)	69
SetI	ASST	8 cut(s)	21, 72, 241, 246, 309, 354, 393, 453
SinI	GGWCC	2 cut(s)	85, 174
SmiMI	CAYNNNNRTG	3 cut(s)	108, 148, 150
Sse9I	AATT	3 cut(s)	362, 463, 469
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	2 cut(s)	248, 272
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	1 cut(s)	453
TasI	AATT	3 cut(s)	362, 463, 469
TatI	WGTACW	2 cut(s)	402, 411
TauI	GCSGC	1 cut(s)	300
Tru1I	TTAA	2 cut(s)	29, 336
Tru9I	TTAA	2 cut(s)	29, 336
TscAI	CASTG	2 cut(s)	145, 205
TseI	GCWGC	2 cut(s)	10, 349
TspDTI	ATGAA	4 cut(s)	111, 344, 373, 384
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	145, 205
VpaK11BI	GGWCC	2 cut(s)	85, 174
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	149
XspI	CTAG	2 cut(s)	248, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.