Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012397

Orthogroup ID

OG0026818

Physical Location & Seq

Genomic Coordinates Reverse (-)

114388 .. 114705

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12397g00200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGACGTATTTTTTTCTTTTAATAAATATCTATTTTGTACATTTCAATTTGAATTAGGAACTCCGCGTACAAGTGGTAAGTCATTAACTACATATACACATCCGGTCATATATGTATTACCATTAGGTATTACAAATTACAATAAAATTACAATAACGAATACAGAAAGAGGAGTTTTTAAAATGCGAGATCTAAAAACATATCTCTCCGTGGCACCGGTAGTAAGTACTCTATGGTTCGGGTCTTTAGCAGGTTTATTGATAGAGATCAATCGTTTTTTTCCGGATGCGTTGATATTCCCCTTTTTTTCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaJ

Protein Analysis

106

Amino Acids

12.08

Weight (kDa)

9.21

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PsaJ	PF01701	62 - 98	1.1e-19	Photosystem I reaction centre subunit IX / PsaJ

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0026818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00630
pyrus_communis	pycom12397g00200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	214
AccII	CGCG	1 cut(s)	67
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	1 cut(s)	65
AfaI	GTAC	3 cut(s)	40, 70, 229
AgeI	ACCGGT	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	47, 53
Aor13HI	TCCGGA	1 cut(s)	283
AsiGI	ACCGGT	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	190
BmcAI	AGTACT	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	216
BmsI	GCATC	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	3 cut(s)	103, 217, 283
Bse118I	RCCGGY	1 cut(s)	217
Bse8I	GATNNNNATC	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	100, 292
BseJI	GATNNNNATC	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	214
BshTI	ACCGGT	1 cut(s)	217
BsiSI	CCGG	3 cut(s)	104, 218, 284
Bsp13I	TCCGGA	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	190, 267
BspACI	CCGC	1 cut(s)	65
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	190, 267
BstAUI	TGTACA	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	100, 292
BstFNI	CGCG	1 cut(s)	67
BstKTI	GATC	2 cut(s)	193, 270
BstMBI	GATC	2 cut(s)	190, 267
BstUI	CGCG	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	100, 292
BveI	ACCTGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	217
Csp6I	GTAC	3 cut(s)	39, 69, 228
CspAI	ACCGGT	1 cut(s)	217
CviQI	GTAC	3 cut(s)	39, 69, 228
DpnI	GATC	2 cut(s)	192, 269
DpnII	GATC	2 cut(s)	190, 267
DraI	TTTAAA	1 cut(s)	181
FaiI	YATR	7 cut(s)	94, 96, 110, 112, 114, 202, 235
FokI	GGATG	2 cut(s)	87, 299
FspBI	CTAG	1 cut(s)	316
HapII	CCGG	3 cut(s)	104, 218, 284
HpaII	CCGG	3 cut(s)	104, 218, 284
Hpy188III	TCNNGA	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	6
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	190, 267
LpnPI	CCDG	4 cut(s)	117, 231, 237, 297
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	316
MaeII	ACGT	1 cut(s)	6
MalI	GATC	2 cut(s)	192, 269
MboI	GATC	2 cut(s)	190, 267
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	4 cut(s)	47, 53, 136, 147
MnlI	CCTC	1 cut(s)	164
MroI	TCCGGA	1 cut(s)	283
MseI	TTAA	3 cut(s)	21, 86, 180
MspI	CCGG	3 cut(s)	104, 218, 284
MvnI	CGCG	1 cut(s)	67
NdeII	GATC	2 cut(s)	190, 267
NlaIV	GGNNCC	1 cut(s)	216
PinAI	ACCGGT	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	216
PsrI	GAACNNNNNNTAC	2 cut(s)	52, 84
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	3 cut(s)	40, 70, 229
RsaNI	GTAC	3 cut(s)	39, 69, 228
SaqAI	TTAA	3 cut(s)	21, 86, 180
Sau3AI	GATC	2 cut(s)	190, 267
ScaI	AGTACT	1 cut(s)	229
SetI	ASST	3 cut(s)	9, 130, 256
SfaNI	GCATC	1 cut(s)	277
SgeI	CNNG	9 cut(s)	78, 84, 116, 200, 223, 230, 253, 264, 296
Sse9I	AATT	4 cut(s)	47, 53, 136, 147
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	316
TaiI	ACGT	1 cut(s)	9
TasI	AATT	4 cut(s)	47, 53, 136, 147
TatI	WGTACW	2 cut(s)	38, 227
Tru1I	TTAA	3 cut(s)	21, 86, 180
Tru9I	TTAA	3 cut(s)	21, 86, 180
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	199
XspI	CTAG	1 cut(s)	316
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.