pycom12401g00080

cellular component organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012401
OG0029413
Physical Location & Seq
Forward (+)
36777 .. 38612
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12401g00080.2

Sequence Viewer

Length: 435 bp
ATGGATTCCATAGGCTTTTCCCGTGCTCTTCCGAAAGAAGCATCCGGAAATTACTTGTCATGGGCTTATGCGATGAAGAATGATTTGCTCGGGAAAAAAGAATCTTGTGCTTATGTGGATGGGTCGCATCAATTTCCCAAGACTAGAGAAGGGGATTTTCCTACAAAAGATGAAAAGTGCTTAGCTTCAAACGGGATGACTTGTGTACTTCCTTTGAGCCCCATATACACCGTCGCCTCTTTTGCGACTGCTAAATATTTTTTGGATTACATAAAAGCTCTTTCTACTTCTCCTTTTGATCTTGTGTCCGAAGTCCATCCTGCCCCTCTGTTATCGAAAGGAGGATCATCCGTATATGTTATTTTTGACAGAACAATGAAAAAATTTACTAAAAAAAAGGGTTTTCCTTGGGGGTATATCTCCGCTGCCTTCTGA

Protein Analysis

145

Amino Acids

15.89

Weight (kDa)

9.07

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029413)

Species Orthologous Gene IDs
pyrus_communis pycom12401g00080
rosa_multiflora Rmu_ssc0000246.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 44
AciI CCGC 1 cut(s) 423
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 1 cut(s) 207
AgsI TTSAA 1 cut(s) 189
AluBI AGCT 2 cut(s) 185, 278
AluI AGCT 2 cut(s) 185, 278
Alw21I GWGCWC 1 cut(s) 28
AlwI GGATC 1 cut(s) 352
Ama87I CYCGRG 1 cut(s) 89
Aor13HI TCCGGA 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 89
BanII GRGCYC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 412
BccI CCATC 2 cut(s) 113, 324
BfaI CTAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 426
BlpI GCTNAGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 89
BmsI GCATC 2 cut(s) 50, 136
Bpu1102I GCTNAGC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 407
BsaWI WCCGGW 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 5 cut(s) 41, 124, 201, 316, 347
BseXI GCAGC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 28, 221
Bsp13I TCCGGA 1 cut(s) 44
Bsp143I GATC 2 cut(s) 298, 344
Bsp1720I GCTNAGC 1 cut(s) 181
BspACI CCGC 1 cut(s) 423
BspEI TCCGGA 1 cut(s) 44
BspPI GGATC 1 cut(s) 352
BspQI GCTCTTC 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 2 cut(s) 298, 344
BssT1I CCWWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 181
BstF5I GGATG 5 cut(s) 41, 124, 201, 316, 347
BstKTI GATC 2 cut(s) 301, 347
BstMBI GATC 2 cut(s) 298, 344
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 412
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 5 cut(s) 41, 124, 201, 316, 347
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 60
CviJI RGCY 5 cut(s) 15, 65, 185, 219, 278
CviKI_1 RGCY 5 cut(s) 15, 65, 185, 219, 278
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 300, 346
DpnII GATC 2 cut(s) 298, 344
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 1 cut(s) 63
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 5 cut(s) 28, 131, 208, 303, 334
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 426
HapII CCGG 1 cut(s) 45
Hin1II CATG 1 cut(s) 63
HinfI GANTC 2 cut(s) 5, 101
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 33, 310, 434
Hpy188III TCNNGA 2 cut(s) 45, 91
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 1 cut(s) 63
Kpn2I TCCGGA 1 cut(s) 44
Kzo9I GATC 2 cut(s) 298, 344
LguI GCTCTTC 1 cut(s) 33
LpnPI CCDG 2 cut(s) 58, 333
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 2 cut(s) 50, 136
MaeI CTAG 1 cut(s) 144
MalI GATC 2 cut(s) 300, 346
MboI GATC 2 cut(s) 298, 344
MboII GAAGA 2 cut(s) 20, 88
MhlI GDGCHC 2 cut(s) 28, 221
MluCI AATT 3 cut(s) 49, 131, 383
MnlI CCTC 3 cut(s) 247, 335, 336
MroI TCCGGA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 298, 344
NlaIII CATG 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 5, 101
PkrI GCNGC 1 cut(s) 427
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 33
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 2 cut(s) 298, 344
SduI GDGCHC 2 cut(s) 28, 221
SetI ASST 2 cut(s) 187, 280
SfaNI GCATC 2 cut(s) 50, 136
Sse9I AATT 3 cut(s) 49, 131, 383
SsiI CCGC 1 cut(s) 423
SspI AATATT 1 cut(s) 257
SspMI CTAG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 335
TasI AATT 3 cut(s) 49, 131, 383
TatI WGTACW 1 cut(s) 205
TfiI GAWTC 2 cut(s) 5, 101
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 3 cut(s) 89, 186, 392
TspGWI ACGGA 1 cut(s) 340
XapI RAATTY 1 cut(s) 383
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.