Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000246.1

Orthogroup ID

OG0029413

Physical Location & Seq

Genomic Coordinates Forward (+)

849 .. 3170

Gene Structure 2322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000246.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgatctttcgggtcttagtacattccataggcttttcccgtgcttttccgaaagaagcatccggaaatggcttgtcatgggcttatgcgatgaagaatgatttgctcgggaaaaagaatcttgtgcttatgcggatgggtcgcttcaatttcccaagactagagaaggggattttcctacaaaagaaagaaaagtgcttagcttcaaatgggatgacttgtgtacttcctttgagccccatatacaccgtcacctcttttgcaactgcaaaagattttagggattacataggtaatcttgattctcaggacgattctccaccttctggaagcgccgctggtgcatcaggccaacgagacatgtccaagatcgccactattgcaagaagccggtcagacacagctcctcttgctgctcccccgggggcacctactgaatcggagactttccaatccccttactccatagggcctccgcagcattacttctatgatcttaggagcactcccacgcccgacatagacagttttaccccacgacagcggaagcagattcagaggttgaatctgtcttgtcatatctcttcctcctctgttacaggaagactcgccctagccactatagcgacccctgagaagcaccctcctccgtccacttccccttttctgtgtgcccaaaagcccgcccgtccggtttatgagcccctttccgattccctcacccaatctcatgagaaccaagcccagcaggccccgccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmF_C

Protein Analysis

253

Amino Acids

27.62

Weight (kDa)

9.41

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029413)

Species	Orthologous Gene IDs
pyrus_communis	pycom12401g00080
rosa_multiflora	Rmu_ssc0000246.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccIII	TCCGGA	1 cut(s)	62
AciI	CCGC	6 cut(s)	133, 336, 476, 544, 684, 755
AfaI	GTAC	2 cut(s)	21, 225
AfiI	CCNNNNNNNGG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	148, 207, 565
AluBI	AGCT	2 cut(s)	203, 404
AluI	AGCT	2 cut(s)	203, 404
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	2 cut(s)	351, 437
Ama87I	CYCGRG	2 cut(s)	107, 421
Aor13HI	TCCGGA	1 cut(s)	62
AoxI	GGCC	3 cut(s)	349, 470, 750
ApeKI	GCWGC	2 cut(s)	413, 478
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	470, 751
AsuC2I	CCSGG	2 cut(s)	422, 423
AsuHPI	GGTGA	2 cut(s)	244, 712
AvaI	CYCGRG	2 cut(s)	107, 421
BaeGI	GKGCMC	2 cut(s)	430, 676
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	2 cut(s)	239, 705
BbsI	GAAGAC	1 cut(s)	610
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	400, 490
BccI	CCATC	1 cut(s)	130
BcnI	CCSGG	2 cut(s)	422, 423
BcoDI	GTCTC	2 cut(s)	351, 437
BfaI	CTAG	2 cut(s)	161, 614
BfmI	CTRYAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	336
BglI	GCCNNNNNGGC	1 cut(s)	749
BisI	GCNGC	3 cut(s)	336, 414, 479
BlpI	GCTNAGC	1 cut(s)	199
BlsI	GCNGC	3 cut(s)	337, 415, 480
Bme1390I	CCNGG	2 cut(s)	422, 423
BmeT110I	CYCGRG	2 cut(s)	107, 421
BmgT120I	GGNCC	2 cut(s)	470, 751
BmiI	GGNNCC	2 cut(s)	429, 753
BmrFI	CCNGG	2 cut(s)	422, 423
BmsI	GCATC	2 cut(s)	68, 353
BpiI	GAAGAC	1 cut(s)	610
Bpu1102I	GCTNAGC	1 cut(s)	199
BpuMI	CCSGG	2 cut(s)	422, 423
BsaJI	CCNNGG	3 cut(s)	420, 421, 422
BsaWI	WCCGGW	2 cut(s)	62, 691
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse118I	RCCGGY	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	420, 421, 422
BseGI	GGATG	3 cut(s)	59, 141, 219
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	320, 624
BseRI	GAGGAG	3 cut(s)	396, 580, 636
BseSI	GKGCMC	2 cut(s)	430, 676
BseXI	GCAGC	2 cut(s)	400, 490
BseYI	CCCAGC	1 cut(s)	744
BshFI	GGCC	3 cut(s)	351, 472, 752
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	506
BsiHKCI	CYCGRG	2 cut(s)	107, 421
BsiSI	CCGG	4 cut(s)	63, 391, 422, 692
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	2 cut(s)	351, 437
BsnI	GGCC	3 cut(s)	351, 472, 752
BsoBI	CYCGRG	2 cut(s)	107, 421
Bsp1286I	GDGCHC	5 cut(s)	239, 430, 506, 676, 705
Bsp13I	TCCGGA	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	3, 369, 493
Bsp1720I	GCTNAGC	1 cut(s)	199
BspACI	CCGC	6 cut(s)	133, 336, 476, 544, 684, 755
BspANI	GGCC	3 cut(s)	351, 472, 752
BspCNI	CTCAG	2 cut(s)	319, 625
BspEI	TCCGGA	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	429, 753
BspT107I	GGYRCC	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	3 cut(s)	420, 421, 422
BssMI	GATC	3 cut(s)	3, 369, 493
Bst4CI	ACNGT	2 cut(s)	250, 527
Bst6I	CTCTTC	1 cut(s)	589
BstC8I	GCNNGC	2 cut(s)	684, 750
BstDEI	CTNAG	5 cut(s)	16, 199, 306, 497, 633
BstF5I	GGATG	3 cut(s)	59, 141, 219
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	3 cut(s)	6, 372, 496
BstMAI	GTCTC	2 cut(s)	351, 437
BstMBI	GATC	3 cut(s)	3, 369, 493
BstMWI	GCNNNNNNNGC	7 cut(s)	341, 380, 410, 478, 623, 749, 754
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	420, 421
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	2 cut(s)	430, 676
BstV1I	GCAGC	2 cut(s)	400, 490
BstV2I	GAAGAC	1 cut(s)	610
BsuRI	GGCC	3 cut(s)	351, 472, 752
BtgZI	GCGATG	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	59, 141, 219
Cac8I	GCNNGC	2 cut(s)	684, 750
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	2 cut(s)	470, 751
Cfr9I	CCCGGG	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	20, 224
CviAII	CATG	3 cut(s)	78, 361, 731
CviQI	GTAC	2 cut(s)	20, 224
DdeI	CTNAG	5 cut(s)	16, 199, 306, 497, 633
DpnI	GATC	3 cut(s)	5, 371, 495
DpnII	GATC	3 cut(s)	3, 369, 493
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco24I	GRGCYC	2 cut(s)	239, 705
Eco88I	CYCGRG	2 cut(s)	107, 421
EcoO109I	RGGNCCY	2 cut(s)	470, 751
EcoT38I	GRGCYC	2 cut(s)	239, 705
FaeI	CATG	3 cut(s)	81, 364, 734
FatI	CATG	3 cut(s)	77, 360, 730
FauI	CCCGC	1 cut(s)	691
Fnu4HI	GCNGC	3 cut(s)	336, 414, 479
FokI	GGATG	3 cut(s)	46, 148, 226
FriOI	GRGCYC	2 cut(s)	239, 705
Fsp4HI	GCNGC	3 cut(s)	336, 414, 479
FspBI	CTAG	2 cut(s)	161, 614
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	3 cut(s)	336, 414, 479
GsaI	CCCAGC	1 cut(s)	748
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	3 cut(s)	351, 472, 752
HapII	CCGG	4 cut(s)	63, 391, 422, 692
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	3 cut(s)	81, 364, 734
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	8 cut(s)	118, 302, 314, 437, 553, 565, 606, 713
HpaII	CCGG	4 cut(s)	63, 391, 422, 692
HphI	GGTGA	2 cut(s)	244, 712
Hpy166II	GTNNAC	2 cut(s)	224, 654
Hpy188I	TCNGA	5 cut(s)	51, 397, 442, 558, 712
Hpy188III	TCNNGA	6 cut(s)	63, 109, 299, 308, 327, 731
Hpy8I	GTNNAC	2 cut(s)	224, 654
HpyAV	CCTTC	2 cut(s)	160, 333
HpyCH4III	ACNGT	2 cut(s)	250, 527
HpyCH4V	TGCA	4 cut(s)	263, 269, 344, 383
HpyF10VI	GCNNNNNNNGC	7 cut(s)	341, 380, 410, 478, 623, 749, 754
HpyF3I	CTNAG	5 cut(s)	16, 199, 306, 497, 633
Hsp92II	CATG	3 cut(s)	81, 364, 734
HspAI	GCGC	1 cut(s)	333
Kpn2I	TCCGGA	1 cut(s)	62
Kzo9I	GATC	3 cut(s)	3, 369, 493
LmnI	GCTCC	3 cut(s)	409, 421, 501
Lsp1109I	GCAGC	2 cut(s)	400, 490
LweI	GCATC	2 cut(s)	68, 353
MaeI	CTAG	2 cut(s)	161, 614
MaeIII	GTNAC	2 cut(s)	250, 595
MalI	GATC	3 cut(s)	5, 371, 495
MboI	GATC	3 cut(s)	3, 369, 493
MboII	GAAGA	3 cut(s)	106, 576, 615
MhlI	GDGCHC	5 cut(s)	239, 430, 506, 676, 705
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	600
MnlI	CCTC	9 cut(s)	265, 417, 483, 552, 598, 601, 654, 657, 728
MroI	TCCGGA	1 cut(s)	62
MseI	TTAA	1 cut(s)	760
MspA1I	CMGCKG	2 cut(s)	338, 544
MspI	CCGG	4 cut(s)	63, 391, 422, 692
MspR9I	CCNGG	2 cut(s)	422, 423
MwoI	GCNNNNNNNGC	7 cut(s)	341, 380, 410, 478, 623, 749, 754
NciI	CCSGG	2 cut(s)	422, 423
NdeII	GATC	3 cut(s)	3, 369, 493
NlaIII	CATG	3 cut(s)	81, 364, 734
NlaIV	GGNNCC	2 cut(s)	429, 753
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	364
PagI	TCATGA	1 cut(s)	730
PciI	ACATGT	1 cut(s)	360
PfeI	GAWTC	7 cut(s)	118, 302, 314, 437, 553, 565, 713
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	337, 415, 480
PleI	GAGTC	1 cut(s)	600
PpsI	GAGTC	1 cut(s)	600
PscI	ACATGT	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	744
PspN4I	GGNNCC	2 cut(s)	429, 753
PspPI	GGNCC	2 cut(s)	470, 751
RsaI	GTAC	2 cut(s)	21, 225
RsaNI	GTAC	2 cut(s)	20, 224
SaqAI	TTAA	1 cut(s)	760
SatI	GCNGC	3 cut(s)	336, 414, 479
Sau3AI	GATC	3 cut(s)	3, 369, 493
Sau96I	GGNCC	2 cut(s)	470, 751
SchI	GAGTC	1 cut(s)	600
ScrFI	CCNGG	2 cut(s)	422, 423
SduI	GDGCHC	5 cut(s)	239, 430, 506, 676, 705
SetI	ASST	7 cut(s)	205, 257, 295, 325, 406, 433, 563
SfaNI	GCATC	2 cut(s)	68, 353
SfcI	CTRYAG	1 cut(s)	621
SmaI	CCCGGG	1 cut(s)	423
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	6 cut(s)	133, 336, 476, 544, 684, 755
SspMI	CTAG	2 cut(s)	161, 614
StyD4I	CCNGG	2 cut(s)	420, 421
TaaI	ACNGT	2 cut(s)	250, 527
TasI	AATT	1 cut(s)	148
TatI	WGTACW	2 cut(s)	19, 223
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	7 cut(s)	118, 302, 314, 437, 553, 565, 713
Tru1I	TTAA	1 cut(s)	760
Tru9I	TTAA	1 cut(s)	760
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	413, 478
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	639
TspMI	CCCGGG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	326
XceI	RCATGY	1 cut(s)	364
XmaI	CCCGGG	1 cut(s)	421
XspI	CTAG	2 cut(s)	161, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.