Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012480

Orthogroup ID

OG0029415

Physical Location & Seq

Genomic Coordinates Forward (+)

21469 .. 22623

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12480g00030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTCACCTGTTTCTACACCTTACACTGCTGCTGTGTTGGAGTATCGAGTTGTAATTAAAGATGCTGCAGATACATCAGTAGATAGTAAGAGCTGGAATAATGCAAATGGTCATGTTGTCATCGATGCCCAACATCCATTGACTCTTTTTACTGCTTGTAGAGCTAATGTGGCTGTGAGAAGGGAACTTCATACTCCTGCATCTGATCGTTCTTGCACCCATCTTGAGTTTGATATTTCTGATGAAACTGGGGATCATGTCGGTGTTTACTGTGAGAATCTTCCTGAAATTGTGGAAGAGGCACTAAGTTTGTTGGGCTTGTCCCCAGAAATATACTTCTCGATACACACTGATAAAGAGGATGGCACACCACTAAGTGGAAGCTCCTTGACTCCTCCCTTCCCACCATGCACATTAAGAACAGCACTAACTCGATACACTGATGTTTTAACTTCTCCAAAAAAGTCTGCCTTGCTCGCTTTAGCAGCACATGCATCTGACCCAACCGAAGTTGATCGATTAAGACATCTTGCATCACCAGGCCGAATTTCCATCGGCCAAGCCTCCACTTGGTGTCTTTTTTGCAGCAGTTGCGCCAAGATTGCTGCCGAGATACTATTCAATCTCGTCATCCTCAAGGTAAATGTTTCTTTATTTTTGCTTCTCTCCTCTCACATTCTCATTTCCGCATTTGTAATTCAATTTGAGACACCAAGGTTGTTTCCTTACAACAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

247

Amino Acids

26.89

Weight (kDa)

5.82

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029415)

Species	Orthologous Gene IDs
pyrus_communis	pycom12480g00030 pycom16g22450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	1 cut(s)	687
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	1 cut(s)	546
AdeI	CACNNNGTG	2 cut(s)	377, 573
AfiI	CCNNNNNNNGG	2 cut(s)	377, 570
AgsI	TTSAA	2 cut(s)	622, 701
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	3 cut(s)	93, 164, 384
AluI	AGCT	3 cut(s)	93, 164, 384
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	2 cut(s)	541, 556
ApeKI	GCWGC	5 cut(s)	29, 65, 485, 585, 605
ApoI	RAATTY	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	528
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BbvI	GCAGC	5 cut(s)	16, 52, 497, 592, 597
BccI	CCATC	3 cut(s)	228, 356, 560
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	5 cut(s)	30, 66, 486, 586, 606
BlsI	GCNGC	5 cut(s)	31, 67, 487, 587, 607
Bme1390I	CCNGG	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	5 cut(s)	52, 115, 209, 503, 542
BmuI	ACTGGG	1 cut(s)	258
BpuEI	CTTGAG	2 cut(s)	245, 620
Bsa29I	ATCGAT	2 cut(s)	123, 517
BsaJI	CCNNGG	1 cut(s)	713
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 570
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	540
BseCI	ATCGAT	2 cut(s)	123, 517
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	3 cut(s)	133, 367, 630
BseLI	CCNNNNNNNGG	2 cut(s)	377, 570
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	384, 658
BseXI	GCAGC	5 cut(s)	16, 52, 497, 592, 597
BshFI	GGCC	2 cut(s)	543, 558
BshVI	ATCGAT	2 cut(s)	123, 517
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	377, 570
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	543, 558
Bsp143I	GATC	3 cut(s)	205, 253, 514
BspACI	CCGC	1 cut(s)	687
BspANI	GGCC	2 cut(s)	543, 558
BspDI	ATCGAT	2 cut(s)	123, 517
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	3 cut(s)	205, 253, 514
BssT1I	CCWWGG	1 cut(s)	713
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	2 cut(s)	491, 591
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	305, 374
BstF5I	GGATG	3 cut(s)	133, 367, 630
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	3 cut(s)	208, 256, 517
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	3 cut(s)	205, 253, 514
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 170, 476, 485, 491, 591, 602
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	5 cut(s)	16, 52, 497, 592, 597
Bsu15I	ATCGAT	2 cut(s)	123, 517
BsuRI	GGCC	2 cut(s)	543, 558
BsuTUI	ATCGAT	2 cut(s)	123, 517
BtsCI	GGATG	3 cut(s)	133, 367, 630
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	3 cut(s)	24, 348, 438
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	596
ClaI	ATCGAT	2 cut(s)	123, 517
CviAII	CATG	4 cut(s)	113, 257, 408, 491
CviJI	RGCY	8 cut(s)	93, 164, 173, 318, 384, 543, 558, 563
CviKI_1	RGCY	8 cut(s)	93, 164, 173, 318, 384, 543, 558, 563
DdeI	CTNAG	2 cut(s)	305, 374
DpnI	GATC	3 cut(s)	207, 255, 516
DpnII	GATC	3 cut(s)	205, 253, 514
DraIII	CACNNNGTG	2 cut(s)	377, 573
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	713
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	713
FaeI	CATG	4 cut(s)	116, 260, 411, 494
FaiI	YATR	6 cut(s)	114, 192, 258, 334, 409, 492
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	112, 256, 407, 490
Fnu4HI	GCNGC	5 cut(s)	30, 66, 486, 586, 606
FokI	GGATG	3 cut(s)	120, 374, 617
Fsp4HI	GCNGC	5 cut(s)	30, 66, 486, 586, 606
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	5 cut(s)	30, 66, 486, 586, 606
HaeIII	GGCC	2 cut(s)	543, 558
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	4 cut(s)	116, 260, 411, 494
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HinfI	GANTC	3 cut(s)	142, 277, 391
HphI	GGTGA	1 cut(s)	528
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	205, 241, 499
Hpy188III	TCNNGA	3 cut(s)	224, 284, 340
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	174, 409
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	8 cut(s)	68, 104, 200, 216, 411, 494, 533, 585
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 170, 476, 485, 491, 591, 602
HpyF3I	CTNAG	2 cut(s)	305, 374
Hsp92II	CATG	4 cut(s)	116, 260, 411, 494
HspAI	GCGC	1 cut(s)	594
Kzo9I	GATC	3 cut(s)	205, 253, 514
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	8 cut(s)	21, 79, 210, 234, 297, 339, 525, 552
Lsp1109I	GCAGC	5 cut(s)	16, 52, 497, 592, 597
LweI	GCATC	5 cut(s)	52, 115, 209, 503, 542
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	207, 255, 516
MboI	GATC	3 cut(s)	205, 253, 514
MboII	GAAGA	2 cut(s)	272, 308
MluCI	AATT	5 cut(s)	54, 288, 546, 696, 701
MlyI	GAGTC	2 cut(s)	136, 385
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	6 cut(s)	292, 352, 405, 574, 644, 679
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	4 cut(s)	57, 416, 449, 521
MslI	CAYNNNNRTG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	7 cut(s)	161, 170, 476, 485, 491, 591, 602
NdeII	GATC	3 cut(s)	205, 253, 514
NlaIII	CATG	4 cut(s)	116, 260, 411, 494
NmeAIII	GCCGAG	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	31, 67, 487, 587, 607
PleI	GAGTC	2 cut(s)	136, 385
PpsI	GAGTC	2 cut(s)	136, 385
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PstI	CTGCAG	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	4 cut(s)	57, 416, 449, 521
SatI	GCNGC	5 cut(s)	30, 66, 486, 586, 606
Sau3AI	GATC	3 cut(s)	205, 253, 514
SchI	GAGTC	2 cut(s)	136, 385
ScrFI	CCNGG	1 cut(s)	540
SetI	ASST	8 cut(s)	10, 22, 95, 166, 386, 642, 719, 740
SfaNI	GCATC	5 cut(s)	52, 115, 209, 503, 542
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	224, 635
SmoI	CTYRAG	2 cut(s)	224, 635
Sse9I	AATT	5 cut(s)	54, 288, 546, 696, 701
SsiI	CCGC	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	5 cut(s)	46, 123, 341, 433, 517
TasI	AATT	5 cut(s)	54, 288, 546, 696, 701
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	4 cut(s)	57, 416, 449, 521
Tru9I	TTAA	4 cut(s)	57, 416, 449, 521
TscAI	CASTG	3 cut(s)	31, 355, 445
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	29, 65, 485, 585, 605
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	179, 258
TspRI	CASTG	3 cut(s)	31, 355, 445
Van91I	CCANNNNNTGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	546
XceI	RCATGY	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.