Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0029415

Physical Location & Seq

Genomic Coordinates Reverse (-)

22278169 .. 22279221

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g22450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTGCAGATATCAGTAGATAGTAAGAGCTGGAATAATGCAAATGGTCATGTTGTCATCGATGCCCAACATCCATTGACTCTTTTTACTGCTTGTAGAGCTAATGTGGCTGTGAGAAGGGAACTTCATACTCCTGCATCTGATCGTTCTTGCACCCATCTTGAGTTTGATATTTCTGGCATACCTGTGTGTTTTGTCCTTCTCAGATATGAAACTGGGGATCATGTCGGTGTTTACTGTGAGAATCTTCCTGAAATTGTGGAAGAGGCACTAAGTTTGTTGGGCTTGTCCCCAGAAATATACTTCTCGATACACACTGATAAAGAGGATGGCACACCACTAAGTGGAAGCTCCTTGACTCCTCCCTTCCCACCATGCACATTAAGAACAGCACTAACTCGATACACTGATGTTTTAACTTCTCCAAAAAAGTCTGCCTTGCTCGCTTTAGCAGCACATCACAATGGGTGGTTGCAAGTCAGAGAAGCCTCCTTGAGGTCATGGCCGAATTTCCATCGGCCAAGCCTCCACTTGGTGTCTTTTTTGCAGCAGTTGCGCCAAGATTGCTGCCGAGATACTATTCAATCTCGTCATCCTCAAGGTAAATGTTTTCTTTATTTTTGCTTCTCTCCTCTCACATTCTCATTTCCGCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

220

Amino Acids

24.61

Weight (kDa)

6.62

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029415)

Species	Orthologous Gene IDs
pyrus_communis	pycom12480g00030 pycom16g22450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	344
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	2 cut(s)	503, 518
AcsI	RAATTY	1 cut(s)	508
AdeI	CACNNNGTG	2 cut(s)	344, 535
AfiI	CCNNNNNNNGG	3 cut(s)	344, 495, 532
AgsI	TTSAA	1 cut(s)	584
AluBI	AGCT	3 cut(s)	30, 101, 351
AluI	AGCT	3 cut(s)	30, 101, 351
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	2 cut(s)	503, 518
ApeKI	GCWGC	4 cut(s)	4, 452, 547, 567
ApoI	RAATTY	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	558
BbvI	GCAGC	3 cut(s)	464, 554, 559
BccI	CCATC	3 cut(s)	165, 323, 522
BfmI	CTRYAG	1 cut(s)	5
BisI	GCNGC	4 cut(s)	5, 453, 548, 568
BlsI	GCNGC	4 cut(s)	6, 454, 549, 569
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	52, 146
BmuI	ACTGGG	1 cut(s)	225
BpuEI	CTTGAG	3 cut(s)	182, 514, 582
Bsa29I	ATCGAT	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 495, 532
Bse1I	ACTGG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	60
BseGI	GGATG	3 cut(s)	70, 334, 592
BseLI	CCNNNNNNNGG	3 cut(s)	344, 495, 532
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	2 cut(s)	351, 621
BseXI	GCAGC	3 cut(s)	464, 554, 559
BshFI	GGCC	2 cut(s)	505, 520
BshVI	ATCGAT	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	3 cut(s)	344, 495, 532
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	505, 520
Bsp143I	GATC	2 cut(s)	142, 220
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	2 cut(s)	505, 520
BspCNI	CTCAG	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	9
BspPI	GGATC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	142, 220
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	3 cut(s)	203, 272, 341
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	70, 334, 592
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	2 cut(s)	145, 223
BstMBI	GATC	2 cut(s)	142, 220
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 107, 443, 452, 553, 564
BstSFI	CTRYAG	1 cut(s)	5
BstV1I	GCAGC	3 cut(s)	464, 554, 559
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	505, 520
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	70, 334, 592
BtsIMutI	CAGTG	2 cut(s)	315, 405
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	1 cut(s)	558
ClaI	ATCGAT	1 cut(s)	60
CviAII	CATG	4 cut(s)	50, 224, 375, 501
CviJI	RGCY	9 cut(s)	30, 101, 110, 285, 351, 488, 505, 520, 525
CviKI_1	RGCY	9 cut(s)	30, 101, 110, 285, 351, 488, 505, 520, 525
DdeI	CTNAG	3 cut(s)	203, 272, 341
DpnI	GATC	2 cut(s)	144, 222
DpnII	GATC	2 cut(s)	142, 220
DraIII	CACNNNGTG	2 cut(s)	344, 535
EaeI	YGGCCR	2 cut(s)	503, 518
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	12
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoRV	GATATC	1 cut(s)	12
FaeI	CATG	4 cut(s)	53, 227, 378, 504
FaiI	YATR	8 cut(s)	51, 129, 182, 210, 225, 301, 376, 502
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	4 cut(s)	49, 223, 374, 500
Fnu4HI	GCNGC	4 cut(s)	5, 453, 548, 568
FokI	GGATG	3 cut(s)	57, 341, 579
Fsp4HI	GCNGC	4 cut(s)	5, 453, 548, 568
GlaI	GCGC	1 cut(s)	557
GluI	GCNGC	4 cut(s)	5, 453, 548, 568
HaeIII	GGCC	2 cut(s)	505, 520
HhaI	GCGC	1 cut(s)	558
Hin1II	CATG	4 cut(s)	53, 227, 378, 504
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HinfI	GANTC	3 cut(s)	79, 244, 358
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	142, 206, 482
Hpy188III	TCNNGA	3 cut(s)	161, 251, 307
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	111, 209, 376
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	7 cut(s)	7, 41, 137, 153, 378, 475, 547
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 107, 443, 452, 553, 564
HpyF3I	CTNAG	3 cut(s)	203, 272, 341
Hsp92II	CATG	4 cut(s)	53, 227, 378, 504
HspAI	GCGC	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	142, 220
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	7 cut(s)	16, 147, 162, 198, 201, 264, 306
Lsp1109I	GCAGC	3 cut(s)	464, 554, 559
LweI	GCATC	2 cut(s)	52, 146
MalI	GATC	2 cut(s)	144, 222
MboI	GATC	2 cut(s)	142, 220
MboII	GAAGA	2 cut(s)	239, 275
MluCI	AATT	2 cut(s)	255, 508
MlyI	GAGTC	2 cut(s)	73, 352
MnlI	CCTC	8 cut(s)	259, 319, 372, 489, 499, 536, 606, 642
MseI	TTAA	2 cut(s)	383, 416
MslI	CAYNNNNRTG	3 cut(s)	185, 228, 462
MwoI	GCNNNNNNNGC	6 cut(s)	98, 107, 443, 452, 553, 564
NdeII	GATC	2 cut(s)	142, 220
NlaIII	CATG	4 cut(s)	53, 227, 378, 504
NmeAIII	GCCGAG	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	6, 454, 549, 569
PleI	GAGTC	2 cut(s)	73, 352
PpsI	GAGTC	2 cut(s)	73, 352
PstI	CTGCAG	1 cut(s)	9
RseI	CAYNNNNRTG	3 cut(s)	185, 228, 462
SaqAI	TTAA	2 cut(s)	383, 416
SatI	GCNGC	4 cut(s)	5, 453, 548, 568
Sau3AI	GATC	2 cut(s)	142, 220
SchI	GAGTC	2 cut(s)	73, 352
SetI	ASST	6 cut(s)	32, 103, 187, 353, 500, 604
SfaNI	GCATC	2 cut(s)	52, 146
SfcI	CTRYAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	3 cut(s)	185, 228, 462
SmlI	CTYRAG	3 cut(s)	161, 493, 597
SmoI	CTYRAG	3 cut(s)	161, 493, 597
Sse9I	AATT	2 cut(s)	255, 508
SsiI	CCGC	1 cut(s)	650
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	60, 308, 400
TasI	AATT	2 cut(s)	255, 508
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	383, 416
Tru9I	TTAA	2 cut(s)	383, 416
TscAI	CASTG	2 cut(s)	322, 412
TseI	GCWGC	4 cut(s)	4, 452, 547, 567
TspDTI	ATGAA	2 cut(s)	116, 225
TspRI	CASTG	2 cut(s)	322, 412
Van91I	CCANNNNNTGG	1 cut(s)	344
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.