pycom12486g00030

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012486
OG0024643
Physical Location & Seq
Reverse (-)
32909 .. 33370
462 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGGCAGCAGAACTACCAGACCATTTTGCGTGGAAATCCAACTCCTCTATCTGCGGACAGCAACCGTACTTGGGAATCTTACAAGACGGGATTCTCGCATTCACCGACTGTGATCCTAACAATATTTTCATAAAGGTGGATTCAAAGATCCCTGGACATGTGCATATCAGGGCCTCTGAAACCCAATCATACTTGGAAGGGGTGTCGATTGAAAATGAAAAGCCAATTATACAGATCAAGGCCATCGCCTCCAAAACAACCGGTAAGTCGGTTGATGTATCCACATTGTTCAAGCCTATATCAATCGACAAAGAACAGTCGGTCTTCCGATTTATCCATGTGGACAGCAAGCGCTATTTAATGCCACACATGGTTGGTGGAAACCTAGCCCTCTGCGCAGTCAGTACAAACACTGATGACCATAATGGAAATGATCTCTTTACAGCTGTTAAGCAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

154

Amino Acids

16.86

Weight (kDa)

5.83

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024643)

Species Orthologous Gene IDs
pyrus_communis pycom06g01630 pycom06g01730 pycom12486g00030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 397
AciI CCGC 1 cut(s) 54
AclWI GGATC 2 cut(s) 107, 142
AfaI GTAC 2 cut(s) 68, 406
AfeI AGCGCT 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 157
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 3 cut(s) 144, 212, 292
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
AlwI GGATC 2 cut(s) 107, 142
Aor51HI AGCGCT 1 cut(s) 353
AoxI GGCC 2 cut(s) 171, 240
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 260
AspLEI GCGC 2 cut(s) 354, 398
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 153
BciVI GTATCC 1 cut(s) 289
BfaI CTAG 1 cut(s) 386
BfoI RGCGCY 1 cut(s) 355
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 260
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 173, 242
BshTI ACCGGT 1 cut(s) 260
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 71
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 2 cut(s) 173, 242
Bsp143I GATC 4 cut(s) 112, 147, 234, 433
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 173, 242
BspPI GGATC 2 cut(s) 107, 142
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 4 cut(s) 112, 147, 234, 433
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 3 cut(s) 66, 110, 318
BstC8I GCNNGC 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 354, 398
BstKTI GATC 4 cut(s) 115, 150, 237, 436
BstMBI GATC 4 cut(s) 112, 147, 234, 433
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 173, 242
BtgZI GCGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 2 cut(s) 354, 398
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 171
Csp6I GTAC 2 cut(s) 67, 405
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 3 cut(s) 158, 338, 370
CviJI RGCY 6 cut(s) 173, 223, 242, 295, 389, 446
CviKI_1 RGCY 6 cut(s) 173, 223, 242, 295, 389, 446
CviQI GTAC 2 cut(s) 67, 405
DpnI GATC 4 cut(s) 114, 149, 236, 435
DpnII GATC 4 cut(s) 112, 147, 234, 433
Eco47III AGCGCT 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 161, 341, 373
FaiI YATR 9 cut(s) 131, 159, 165, 190, 230, 299, 339, 371, 423
FatI CATG 3 cut(s) 157, 337, 369
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 386
FspI TGCGCA 1 cut(s) 397
GlaI GCGC 2 cut(s) 353, 397
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 2 cut(s) 173, 242
HapII CCGG 1 cut(s) 261
HhaI GCGC 2 cut(s) 354, 398
Hin1II CATG 3 cut(s) 161, 341, 373
Hin6I GCGC 2 cut(s) 352, 396
HinP1I GCGC 2 cut(s) 352, 396
HinfI GANTC 3 cut(s) 75, 91, 140
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 178, 329
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 3 cut(s) 66, 110, 318
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
Hsp92II CATG 3 cut(s) 161, 341, 373
HspAI GCGC 2 cut(s) 352, 396
Kzo9I GATC 4 cut(s) 112, 147, 234, 433
LpnPI CCDG 6 cut(s) 30, 138, 154, 165, 274, 440
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 386
MalI GATC 4 cut(s) 114, 149, 236, 435
MboI GATC 4 cut(s) 112, 147, 234, 433
MboII GAAGA 1 cut(s) 316
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 4 cut(s) 55, 184, 259, 401
MseI TTAA 2 cut(s) 359, 450
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 98
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 4 cut(s) 112, 147, 234, 433
NlaIII CATG 3 cut(s) 161, 341, 373
NsbI TGCGCA 1 cut(s) 397
NspI RCATGY 1 cut(s) 161
PciI ACATGT 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 98
PfeI GAWTC 3 cut(s) 75, 91, 140
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 1 cut(s) 7
PscI ACATGT 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 68, 406
RsaNI GTAC 2 cut(s) 67, 405
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 359, 450
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 112, 147, 234, 433
Sau96I GGNCC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 153
SetI ASST 3 cut(s) 138, 387, 448
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 1 cut(s) 225
SsiI CCGC 1 cut(s) 54
SspI AATATT 1 cut(s) 124
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 66, 110, 318
TaqI TCGA 2 cut(s) 206, 306
TaqII GACCGA 1 cut(s) 310
TasI AATT 1 cut(s) 225
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 3 cut(s) 75, 91, 140
Tru1I TTAA 2 cut(s) 359, 450
Tru9I TTAA 2 cut(s) 359, 450
TscAI CASTG 1 cut(s) 418
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 118, 231
TspRI CASTG 1 cut(s) 418
XceI RCATGY 1 cut(s) 161
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.