pycom12561g00040

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012561
Physical Location & Seq
Reverse (-)
44469 .. 45203
735 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12561g00040.1

Sequence Viewer

Length: 240 bp
ATGAAGATCAGAGATGCTCAAGTATATATGTTAACAACTTGGCATTGCGTAAAAGACTTTTGGCTTGCGATACTGCATAAGGATTGCTTGGCTAAGGAACTTGAAGATTCAAGACCTTTTTCAGTTCTCTTTTCCGTTTTGTTGGTGTTTGGAATGATTCATTTTTATTATTTTTCTTCTAAATGCCTAACAATCGGTAATCTAATTGTATCATTACTTTATGTTAATTCAAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.33

Weight (kDa)

8.52

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024653)

Species Orthologous Gene IDs
pyrus_communis pycom07g22960 pycom08g02830 pycom12561g00040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 104, 111, 231
BmsI GCATC 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 43
Bsp143I GATC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 43
BssMI GATC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 93
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 66
CviJI RGCY 2 cut(s) 64, 92
CviKI_1 RGCY 2 cut(s) 64, 92
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
FaiI YATR 5 cut(s) 25, 27, 29, 78, 222
FalI AAGNNNNNCTT 2 cut(s) 71, 103
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 2 cut(s) 107, 157
HpaI GTTAAC 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 2 cut(s) 111, 231
Hpy8I GTNNAC 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 93
KspAI GTTAAC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 6
LweI GCATC 1 cut(s) 4
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 16, 116, 168
MluCI AATT 2 cut(s) 204, 226
MseI TTAA 2 cut(s) 32, 225
NdeII GATC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 107, 157
SaqAI TTAA 2 cut(s) 32, 225
Sau3AI GATC 1 cut(s) 6
SetI ASST 1 cut(s) 118
SfaNI GCATC 1 cut(s) 4
SgeI CNNG 6 cut(s) 32, 51, 77, 100, 113, 123
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 2 cut(s) 204, 226
TasI AATT 2 cut(s) 204, 226
TfiI GAWTC 2 cut(s) 107, 157
Tru1I TTAA 2 cut(s) 32, 225
Tru9I TTAA 2 cut(s) 32, 225
TspDTI ATGAA 2 cut(s) 17, 149
TspGWI ACGGA 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.