Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0029418

Physical Location & Seq

Genomic Coordinates Reverse (-)

1956953 .. 1957147

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCCGAAGCCCAATATTGGCATCCACAGGTTTGTGTTTGTTCTCTTCAAGCAGAATCGAAGACAATCAATCAACACACCTTCCTCGAGGGATCACTTCAGCACTCGAAGCTTCGCGGCCGAAAATGACCTGGGTCTTCCTGTCGCTGCCGTCTACTTCAACGCGCAGAGAGAAACTGCAGCTAGAAGACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

65

Amino Acids

7.39

Weight (kDa)

11.71

Isoelectric Point (pI)

78.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029418)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g02250
rosa_chinensis	RchiOBHm_Chr3g0473011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	2 cut(s)	116, 164
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	49, 160
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	111, 182
AluI	AGCT	2 cut(s)	111, 182
AlwI	GGATC	1 cut(s)	99
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	146, 179
AspLEI	GCGC	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	85
BbsI	GAAGAC	2 cut(s)	67, 128
BbvI	GCAGC	2 cut(s)	133, 191
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	131
BfaI	CTAG	2 cut(s)	183, 193
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	3 cut(s)	117, 147, 180
BlsI	GCNGC	3 cut(s)	118, 148, 181
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	30
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	67, 128
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseX3I	CGGCCG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	133, 191
Bsh1236I	CGCG	2 cut(s)	116, 164
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	17
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	116, 164
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	2 cut(s)	116, 164
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	131
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	2 cut(s)	116, 164
BstV1I	GCAGC	2 cut(s)	133, 191
BstV2I	GAAGAC	2 cut(s)	67, 128
BstZI	CGGCCG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	21
CfoI	GCGC	1 cut(s)	166
CviJI	RGCY	4 cut(s)	10, 111, 119, 182
CviKI_1	RGCY	4 cut(s)	10, 111, 119, 182
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	117
EagI	CGGCCG	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EclXI	CGGCCG	1 cut(s)	117
Eco52I	CGGCCG	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	117, 147, 180
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	117, 147, 180
FspBI	CTAG	2 cut(s)	183, 193
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	3 cut(s)	117, 147, 180
HaeIII	GGCC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	4 cut(s)	13, 116, 143, 153
Lsp1109I	GCAGC	2 cut(s)	133, 191
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	2 cut(s)	183, 193
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	37, 72, 128
MnlI	CCTC	2 cut(s)	81, 94
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	2 cut(s)	116, 164
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	118, 148, 181
PshAI	GACNNNNGTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspXI	VCTCGAGB	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	181
SatI	GCNGC	3 cut(s)	117, 147, 180
Sau3AI	GATC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	5 cut(s)	32, 82, 113, 132, 184
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SsiI	CCGC	1 cut(s)	116
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	2 cut(s)	183, 193
StyD4I	CCNGG	1 cut(s)	129
TaqI	TCGA	3 cut(s)	58, 86, 106
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	146, 179
XhoI	CTCGAG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	2 cut(s)	183, 193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.