RchiOBHm_Chr3g0473011

Protein TERMINAL FLOWER 1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
18979892 .. 18980176
285 bp
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UTR
Exon/CDS
Intron
PRQ43870

Sequence Viewer

Length: 285 bp
ATGATCAGCACTAATATTGTTCATCGTTCTGGTCTTAACTTGAATGAATTATATACTTCATTAACAGGAAGAGAGATGGTGAGCTACGAGATGCCAAGGCCAAACATAGGAATCCACAGGTTTGTGTTTGTTCTTTTCAAGCAGAAACGAAGGCAGTCGGTGAACCCACCTTCTTCAAGGGATCACTTCAACACCCGAAGCTTCGCAGCCGAAAACGACCTCGGTCTTCCTGTTGCTGCCGTTTACTTCAATGCGCAGAGAGAAACGGCAGCAAGAAGACGCTAG

Protein Analysis

94

Amino Acids

10.85

Weight (kDa)

11.11

Isoelectric Point (pI)

68.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029418)

Species Orthologous Gene IDs
pyrus_communis pycom12g02250
rosa_chinensis RchiOBHm_Chr3g0473011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 255
AclWI GGATC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 5 cut(s) 43, 139, 177, 190, 250
AluBI AGCT 2 cut(s) 84, 201
AluI AGCT 2 cut(s) 84, 201
AlwI GGATC 1 cut(s) 189
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 3 cut(s) 206, 236, 269
AspLEI GCGC 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 91, 172
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 3 cut(s) 218, 223, 281
BccI CCATC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 224, 282
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 283
BisI GCNGC 3 cut(s) 207, 237, 270
BlsI GCNGC 3 cut(s) 208, 238, 271
BmsI GCATC 1 cut(s) 81
BoxI GACNNNNGTC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 95, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 95, 220
BseLI CCNNNNNNNGG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 218, 223, 281
BshFI GGCC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 100
Bsp143I GATC 2 cut(s) 3, 181
BspANI GGCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 95, 220
BssMI GATC 2 cut(s) 3, 181
BssT1I CCWWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 64
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 2 cut(s) 6, 184
BstMBI GATC 2 cut(s) 3, 181
BstPAI GACNNNNGTC 1 cut(s) 222
BstV1I GCAGC 3 cut(s) 218, 223, 281
BstV2I GAAGAC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 100
CfoI GCGC 1 cut(s) 256
CviJI RGCY 4 cut(s) 84, 100, 201, 209
CviKI_1 RGCY 4 cut(s) 84, 100, 201, 209
DpnI GATC 2 cut(s) 5, 183
DpnII GATC 2 cut(s) 3, 181
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaiI YATR 3 cut(s) 52, 54, 107
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 207, 237, 270
Fsp4HI GCNGC 3 cut(s) 207, 237, 270
FspBI CTAG 1 cut(s) 283
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 1 cut(s) 255
GluI GCNGC 3 cut(s) 207, 237, 270
HaeIII GGCC 1 cut(s) 100
HhaI GCGC 1 cut(s) 256
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 1 cut(s) 111
HphI GGTGA 2 cut(s) 91, 172
Hpy166II GTNNAC 2 cut(s) 163, 244
Hpy8I GTNNAC 2 cut(s) 163, 244
HpyAV CCTTC 2 cut(s) 144, 180
HspAI GCGC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 181
LpnPI CCDG 4 cut(s) 15, 51, 103, 243
Lsp1109I GCAGC 3 cut(s) 218, 223, 281
LweI GCATC 1 cut(s) 81
MaeI CTAG 1 cut(s) 283
MalI GATC 2 cut(s) 5, 183
MboI GATC 2 cut(s) 3, 181
MboII GAAGA 3 cut(s) 81, 165, 218
MluCI AATT 1 cut(s) 47
MnlI CCTC 1 cut(s) 230
MseI TTAA 2 cut(s) 36, 62
NdeII GATC 2 cut(s) 3, 181
NsbI TGCGCA 1 cut(s) 255
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 3 cut(s) 208, 238, 271
PshAI GACNNNNGTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 36, 62
SatI GCNGC 3 cut(s) 207, 237, 270
Sau3AI GATC 2 cut(s) 3, 181
SetI ASST 5 cut(s) 86, 122, 172, 203, 222
SfaNI GCATC 1 cut(s) 81
Sse9I AATT 1 cut(s) 47
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 95
TaqII GACCGA 1 cut(s) 212
TasI AATT 1 cut(s) 47
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 2 cut(s) 36, 62
Tru9I TTAA 2 cut(s) 36, 62
TseI GCWGC 3 cut(s) 206, 236, 269
TspDTI ATGAA 3 cut(s) 11, 48, 60
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.