Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0029420

Physical Location & Seq

Genomic Coordinates Forward (+)

3261701 .. 3262054

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCATTTAATCCTCAGCCCCTTACTCCCGAGCAAAGATATCATCTTTCATGGGAAGCTGCTACCCAGAGGTTTATGGAGTATTCTGAGCTTGACAGAGTCTTGAACAAAGACAACGATGGTGCAAAATCAAGCATGAGAAATCGAAAGCAGATCCCAAAATCCGCATCAATGCCTAGCTTGACAGGTATGGTTGACGGAGGATTGGCATTTGCCCACCACTGTCTCACCGGCAATGAATTCCTTAGACTATGCACCGGAGCAATTCCCGGAAGCCGAGACTATGACAAGCAACACTGCAAAGACCTTCATCTCTTGCCTCCCCAGGTAGAGAATCCAATATATGGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006664 GO:0006725 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009698 GO:0009699 GO:0009707 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009867 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0019374 GO:0019375 GO:0019438 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031323 GO:0031407 GO:0031408 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0032870 GO:0035250 GO:0042170 GO:0042221 GO:0042548 GO:0042550 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0046467 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

118

Amino Acids

13.27

Weight (kDa)

6.95

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029420)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g03460
rosa_multiflora	Rmu_co8168836.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	344
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	59, 91, 180
AluI	AGCT	3 cut(s)	59, 91, 180
Alw26I	GTCTC	2 cut(s)	230, 273
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	239
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	230, 273
BfaI	CTAG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	270, 326
BmeT110I	CYCGRG	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	270, 326
BmsI	GCATC	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	29, 78
BseXI	GCAGC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	231, 258, 270
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	2 cut(s)	230, 273
BsoBI	CYCGRG	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	28, 79
BspPI	GGATC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	224
BstDEI	CTNAG	3 cut(s)	15, 87, 245
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	230, 273
BstMBI	GATC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	268, 324
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	220, 295
Cfr10I	RCCGGY	1 cut(s)	230
CviAII	CATG	2 cut(s)	51, 136
CviJI	RGCY	5 cut(s)	19, 59, 91, 180, 276
CviKI_1	RGCY	5 cut(s)	19, 59, 91, 180, 276
DdeI	CTNAG	3 cut(s)	15, 87, 245
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	41
FaeI	CATG	2 cut(s)	54, 139
FaiI	YATR	8 cut(s)	52, 77, 137, 191, 253, 285, 343, 345
FatI	CATG	2 cut(s)	50, 135
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	1 cut(s)	60
HapII	CCGG	3 cut(s)	231, 258, 270
Hin1II	CATG	2 cut(s)	54, 139
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	99, 334
HpaII	CCGG	3 cut(s)	231, 258, 270
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	29, 103
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	125, 255, 300
HpyF3I	CTNAG	3 cut(s)	15, 87, 245
Hsp92II	CATG	2 cut(s)	54, 139
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	7 cut(s)	80, 171, 244, 271, 283, 311, 338
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	177
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	2 cut(s)	239, 264
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	24, 63, 194, 330
MseI	TTAA	1 cut(s)	9
MspI	CCGG	3 cut(s)	231, 258, 270
MspR9I	CCNGG	2 cut(s)	270, 326
MvaI	CCWGG	1 cut(s)	326
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	54, 139
NmeAIII	GCCGAG	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	334
PflFI	GACNNNGTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	270, 326
SetI	ASST	7 cut(s)	61, 74, 93, 182, 190, 309, 330
SfaNI	GCATC	1 cut(s)	176
Sse9I	AATT	2 cut(s)	239, 264
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	268, 324
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	145
TasI	AATT	2 cut(s)	239, 264
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	227, 302
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	39, 252, 299
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	227, 302
Tth111I	GACNNNGTC	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	345
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.