Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8168836.1

Orthogroup ID

OG0029420

Physical Location & Seq

Genomic Coordinates Reverse (-)

183 .. 650

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8168836.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgggaaaatttgttgtttgtgcggaccatccatcaaatcagtttttcagatcatttcctaattgcttgacttatgaaacatctgaggactttgttgccaaagtaaaggaagcaatggaaaatgaccctcagccccttactccagagcaaagatttaatctttcatgggaagcagctacacagagattcatggagtattctgagatggataaagtcttggatacggaaaagaatggtgcaagatcaagcagatgtaagggaaagggggtctcaaagtctgcatctatgcctagcttatcaggtatggttgatggaggattggcatttgcccattattgtctcaccgggaatgaattccttagattatgcactggggcaacccctggaacccgtgactacgacaagcaacattgtaaagatctccgtctcttgcctcctcaggttgaaaaccctatttatggctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006664 GO:0006725 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009698 GO:0009699 GO:0009707 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009867 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0019374 GO:0019375 GO:0019438 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031323 GO:0031407 GO:0031408 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0032870 GO:0035250 GO:0042170 GO:0042221 GO:0042548 GO:0042550 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0046467 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

155

Amino Acids

17.43

Weight (kDa)

5.92

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029420)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g03460
rosa_multiflora	Rmu_co8168836.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	8, 353
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	176, 294
AluI	AGCT	2 cut(s)	176, 294
Alw26I	GTCTC	3 cut(s)	274, 344, 431
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	2 cut(s)	8, 353
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	438
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	4 cut(s)	36, 40, 199, 305
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	274, 344, 431
BfaI	CTAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	346, 384
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	2 cut(s)	346, 384
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	376
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	4 cut(s)	75, 143, 192, 452
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	3 cut(s)	274, 344, 431
BsmBI	CGTCTC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	50, 242, 418
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	4 cut(s)	76, 142, 193, 451
BspLI	GGNNCC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	50, 242, 418
Bst2UI	CCWGG	1 cut(s)	384
BstDEI	CTNAG	5 cut(s)	84, 129, 201, 359, 438
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	53, 245, 421
BstMAI	GTCTC	3 cut(s)	274, 344, 431
BstMBI	GATC	3 cut(s)	50, 242, 418
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	344, 382
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
Bsu36I	CCTNAGG	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	25
CviAII	CATG	2 cut(s)	165, 190
CviJI	RGCY	4 cut(s)	133, 176, 294, 462
CviKI_1	RGCY	4 cut(s)	133, 176, 294, 462
DdeI	CTNAG	5 cut(s)	84, 129, 201, 359, 438
DpnI	GATC	3 cut(s)	52, 244, 420
DpnII	GATC	3 cut(s)	50, 242, 418
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	25
Eco81I	CCTNAGG	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	2 cut(s)	168, 193
FaiI	YATR	7 cut(s)	75, 166, 191, 287, 305, 367, 459
FatI	CATG	2 cut(s)	164, 189
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	126
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	2 cut(s)	168, 193
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	50, 85, 202
Hpy188III	TCNNGA	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	239, 281, 369
HpyF3I	CTNAG	5 cut(s)	84, 129, 201, 359, 438
Hsp92II	CATG	2 cut(s)	168, 193
Kzo9I	GATC	3 cut(s)	50, 242, 418
LpnPI	CCDG	8 cut(s)	156, 285, 357, 358, 369, 396, 425, 448
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	290
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	3 cut(s)	52, 244, 420
MboI	GATC	3 cut(s)	50, 242, 418
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	3 cut(s)	8, 61, 353
MnlI	CCTC	5 cut(s)	79, 138, 308, 444, 447
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	156
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	346, 384
MvaI	CCWGG	1 cut(s)	384
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	3 cut(s)	50, 242, 418
NlaIII	CATG	2 cut(s)	168, 193
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	3 cut(s)	50, 242, 418
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	346, 384
SetI	ASST	4 cut(s)	178, 296, 304, 444
SfaNI	GCATC	1 cut(s)	290
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	3 cut(s)	8, 61, 353
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	344, 382
TasI	AATT	3 cut(s)	8, 61, 353
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	4 cut(s)	90, 153, 178, 366
TspGWI	ACGGA	2 cut(s)	239, 413
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	2 cut(s)	8, 353
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.