Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0029422

Physical Location & Seq

Genomic Coordinates Reverse (-)

4087566 .. 4088009

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATCGATCATACCTCAACGATCACTTCCATGTTCAATGATCTTCTTTCGTCTTTGGAGGGTGAAATGCCGAAGTACGTGGCCGCAGTAAAAGAGCTTGCCCAAGCTGAAGATTTTCGAGTCGAACACGAAGGGATAATAACTCAAATGGGACTGGCCATGCAGAAATGCCAAGAGAGGAAAGACATTGTGGCCAATTATGATGCCAAGGTTACAGAACTCGAGGCTGAACTGGTCCGAGTAAAGGCAGAACGAGCTGAGGCAATGGCGAATCTAGAAACTGCTGTGGATGAAATGGAACCTCTTAAGCAGAGGTTTGCAGATAGCTCATTAAAATCTGAAAACTTGATTGTGAGGCAGGCTACCTTGACATTGCAAAAGTGTAGTTCTGTTGGAACCTGGGCCGTCATACAAGATGCACTGAAGAAGTACTTTAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

148

Amino Acids

16.56

Weight (kDa)

5.02

Isoelectric Point (pI)

19.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029422)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g04150 pycom12g04370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AcoI	YGGCCR	3 cut(s)	81, 156, 192
AcuI	CTGAAG	2 cut(s)	129, 443
AfaI	GTAC	2 cut(s)	77, 431
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	4 cut(s)	97, 107, 257, 327
AluI	AGCT	4 cut(s)	97, 107, 257, 327
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	4 cut(s)	81, 156, 192, 402
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	235, 402
AsuHPI	GGTGA	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	235
BalI	TGGCCA	2 cut(s)	158, 194
BbvCI	CCTCAGC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	400
BfaI	CTAG	1 cut(s)	275
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	235, 402
BmiI	GGNNCC	2 cut(s)	300, 397
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	2 cut(s)	193, 406
Bpu10I	CCTNAGC	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	207, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	159, 237
Bse3DI	GCAATG	2 cut(s)	270, 371
BseBI	CCWGG	1 cut(s)	400
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	207, 399
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	2 cut(s)	270, 371
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	159, 237
BshFI	GGCC	4 cut(s)	83, 158, 194, 404
BshVI	ATCGAT	1 cut(s)	6
BsiHKCI	CYCGRG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	4 cut(s)	83, 158, 194, 404
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	4 cut(s)	3, 7, 21, 40
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	4 cut(s)	83, 158, 194, 404
BspCNI	CTCAG	1 cut(s)	250
BspDI	ATCGAT	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	300, 397
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	270, 371
BsrI	ACTGG	2 cut(s)	159, 237
BssECI	CCNNGG	2 cut(s)	207, 399
BssMI	GATC	4 cut(s)	3, 7, 21, 40
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	400
BstAFI	CTTAAG	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	99, 360
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	4 cut(s)	6, 10, 24, 43
BstMBI	GATC	4 cut(s)	3, 7, 21, 40
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	4 cut(s)	83, 158, 194, 404
BsuTUI	ATCGAT	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	99, 360
Cfr13I	GGNCC	2 cut(s)	235, 402
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	76, 430
CviAII	CATG	2 cut(s)	31, 160
CviQI	GTAC	2 cut(s)	76, 430
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	5, 9, 23, 42
DpnII	GATC	4 cut(s)	3, 7, 21, 40
EaeI	YGGCCR	3 cut(s)	81, 156, 192
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	129, 443
Eco88I	CYCGRG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	34, 163
FaiI	YATR	5 cut(s)	12, 32, 161, 201, 410
FalI	AAGNNNNNCTT	1 cut(s)	416
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	2 cut(s)	30, 159
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	4 cut(s)	83, 158, 194, 404
Hin1II	CATG	2 cut(s)	34, 163
HinfI	GANTC	2 cut(s)	120, 271
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	239, 340
Hpy188III	TCNNGA	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	163, 320, 376, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	34, 163
Kzo9I	GATC	4 cut(s)	3, 7, 21, 40
LpnPI	CCDG	5 cut(s)	140, 218, 344, 385, 412
LweI	GCATC	2 cut(s)	193, 406
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	4 cut(s)	5, 9, 23, 42
MboI	GATC	4 cut(s)	3, 7, 21, 40
MboII	GAAGA	3 cut(s)	35, 122, 436
MlsI	TGGCCA	2 cut(s)	158, 194
MluCI	AATT	1 cut(s)	196
MluNI	TGGCCA	2 cut(s)	158, 194
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	8 cut(s)	25, 52, 171, 217, 253, 306, 312, 348
Mox20I	TGGCCA	2 cut(s)	158, 194
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	2 cut(s)	158, 194
MseI	TTAA	3 cut(s)	306, 332, 435
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	2 cut(s)	158, 194
MspCI	CTTAAG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	4 cut(s)	3, 7, 21, 40
NlaIII	CATG	2 cut(s)	34, 163
NlaIV	GGNNCC	2 cut(s)	300, 397
PaeR7I	CTCGAG	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	300, 397
PspPI	GGNCC	2 cut(s)	235, 402
PspXI	VCTCGAGB	1 cut(s)	221
RsaI	GTAC	2 cut(s)	77, 431
RsaNI	GTAC	2 cut(s)	76, 430
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	306, 332, 435
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	4 cut(s)	3, 7, 21, 40
Sau96I	GGNCC	2 cut(s)	235, 402
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	193, 406
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	235
SlaI	CTCGAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	221, 305
SmoI	CTYRAG	2 cut(s)	221, 305
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	207
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	4 cut(s)	6, 118, 123, 222
TasI	AATT	1 cut(s)	196
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	3 cut(s)	306, 332, 435
Tru9I	TTAA	3 cut(s)	306, 332, 435
TscAI	CASTG	1 cut(s)	426
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	426
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.