Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0029422

Physical Location & Seq

Genomic Coordinates Forward (+)

4222206 .. 4222619

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTCAAGGATCTTCTTTCGTCTTTGGAGGGTGAAATGCCGAAGTACGTGGATGCAGTAAAAGAGCTTGCCCAAACTGAAGGTTTTCCAGTAGAACACGAAAAGATAAAAGCTCAAATGGGACTGGCCATGCAGAAATGCCAAGAGAGAAAAGACATTGTGGCCAATTATGATGCCAAGGTTACAGAACTCGAGGCTGAACTGGCCCGAGTAAAGGCAGAACGAGCTGAGGCAATGGCGGATCTACAAACTGCGGTGGATGAAATGGAACCTCTTAAGCAGAGGTTCGCAGATAGCTCTTTAAAATCTGAAAACTTGATTGTGCGGCAGACTACATTGGCATTACAAAAGTGTGGGTCTGTTGGAACCTGGGCCGTCCTACAAGATGCACTGAAGAAGTACTTTAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

138

Amino Acids

15.44

Weight (kDa)

5.32

Isoelectric Point (pI)

24.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029422)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g04150 pycom12g04370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	239, 254, 325
AclWI	GGATC	2 cut(s)	18, 249
AcoI	YGGCCR	2 cut(s)	126, 162
AcuI	CTGAAG	2 cut(s)	99, 413
AfaI	GTAC	2 cut(s)	47, 401
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	4 cut(s)	67, 113, 227, 297
AluI	AGCT	4 cut(s)	67, 113, 227, 297
AlwI	GGATC	2 cut(s)	18, 249
Ama87I	CYCGRG	2 cut(s)	191, 207
AoxI	GGCC	4 cut(s)	126, 162, 204, 372
Asp700I	GAANNNNTTC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	205, 372
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	2 cut(s)	191, 207
BalI	TGGCCA	2 cut(s)	128, 164
BbvCI	CCTCAGC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	370
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	1 cut(s)	370
BmeT110I	CYCGRG	2 cut(s)	191, 207
BmgT120I	GGNCC	2 cut(s)	205, 372
BmiI	GGNNCC	2 cut(s)	270, 367
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	3 cut(s)	43, 163, 376
Bpu10I	CCTNAGC	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	177, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	3 cut(s)	89, 129, 207
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	177, 369
BseGI	GGATG	2 cut(s)	58, 265
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	3 cut(s)	89, 129, 207
BshFI	GGCC	4 cut(s)	128, 164, 206, 374
BsiHKCI	CYCGRG	2 cut(s)	191, 207
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	4 cut(s)	128, 164, 206, 374
BsoBI	CYCGRG	2 cut(s)	191, 207
Bsp143I	GATC	2 cut(s)	10, 241
BspACI	CCGC	3 cut(s)	239, 254, 325
BspANI	GGCC	4 cut(s)	128, 164, 206, 374
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	270, 367
BspPI	GGATC	2 cut(s)	18, 249
BspTI	CTTAAG	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	3 cut(s)	89, 129, 207
BssECI	CCNNGG	2 cut(s)	177, 369
BssMI	GATC	2 cut(s)	10, 241
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	370
BstAFI	CTTAAG	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	58, 265
BstKTI	GATC	2 cut(s)	13, 244
BstMBI	GATC	2 cut(s)	10, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 224
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	10, 241
BstYI	RGATCY	2 cut(s)	10, 241
BsuRI	GGCC	4 cut(s)	128, 164, 206, 374
BtsCI	GGATG	2 cut(s)	58, 265
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	205, 372
Csp6I	GTAC	2 cut(s)	46, 400
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	9 cut(s)	67, 113, 128, 164, 197, 206, 227, 297, 374
CviKI_1	RGCY	9 cut(s)	67, 113, 128, 164, 197, 206, 227, 297, 374
CviQI	GTAC	2 cut(s)	46, 400
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	2 cut(s)	12, 243
DpnII	GATC	2 cut(s)	10, 241
DraI	TTTAAA	1 cut(s)	303
EaeI	YGGCCR	2 cut(s)	126, 162
EciI	GGCGGA	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	99, 413
Eco88I	CYCGRG	2 cut(s)	191, 207
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	133
FaiI	YATR	2 cut(s)	131, 171
FalI	AAGNNNNNCTT	1 cut(s)	386
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	2 cut(s)	65, 272
Fsp4HI	GCNGC	1 cut(s)	326
GluI	GCNGC	1 cut(s)	326
HaeIII	GGCC	4 cut(s)	128, 164, 206, 374
Hin1II	CATG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	56, 133, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 224
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	10, 241
LpnPI	CCDG	5 cut(s)	102, 110, 188, 355, 382
LweI	GCATC	3 cut(s)	43, 163, 376
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	12, 243
MboI	GATC	2 cut(s)	10, 241
MboII	GAAGA	2 cut(s)	5, 406
MflI	RGATCY	2 cut(s)	10, 241
MlsI	TGGCCA	2 cut(s)	128, 164
MluCI	AATT	1 cut(s)	166
MluNI	TGGCCA	2 cut(s)	128, 164
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	5 cut(s)	22, 187, 223, 276, 282
Mox20I	TGGCCA	2 cut(s)	128, 164
MroXI	GAANNNNTTC	1 cut(s)	84
MscI	TGGCCA	2 cut(s)	128, 164
MseI	TTAA	3 cut(s)	276, 302, 405
Msp20I	TGGCCA	2 cut(s)	128, 164
MspCI	CTTAAG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	203, 224
NdeII	GATC	2 cut(s)	10, 241
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	270, 367
PaeR7I	CTCGAG	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	327
Ppu21I	YACGTR	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	270, 367
PspPI	GGNCC	2 cut(s)	205, 372
PspXI	VCTCGAGB	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	10, 241
RsaI	GTAC	2 cut(s)	47, 401
RsaNI	GTAC	2 cut(s)	46, 400
SaqAI	TTAA	3 cut(s)	276, 302, 405
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	2 cut(s)	10, 241
Sau96I	GGNCC	2 cut(s)	205, 372
ScaI	AGTACT	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	370
SfaNI	GCATC	3 cut(s)	43, 163, 376
Sfr274I	CTCGAG	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	191, 275
SmoI	CTYRAG	2 cut(s)	191, 275
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	239, 254, 325
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	328
Tru1I	TTAA	3 cut(s)	276, 302, 405
Tru9I	TTAA	3 cut(s)	276, 302, 405
TscAI	CASTG	1 cut(s)	396
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	396
Vha464I	CTTAAG	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.