Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0029423

Physical Location & Seq

Genomic Coordinates Forward (+)

5477378 .. 5479036

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCCAACCAATTTGCCCGCCAACTCTGCCTTTCTTCCTTCCCTCCAAATCCACAGAATTTTAAATCTCAATGCTCCAACGGTCAACTGAGAGAAGCTCTGTTGGAAATGGCCGCTATAGGCCTTGAGATGAAGTTCGACGGCTACTATACACTCTTAAATGAGTGCGTAAACCGAAAGGCCTTCAGAGAAGGCCAAAGAGTCCATGCCCACATGATCAGAACCTGTTATCTTCCGCCTGTGCATCTCGGAACCCGGCTGATCATCTTCTACAACTACTGCGATTGTTTGGGTGACGCAGGCCGTATGCTCGACGAAATGCCCGAAAGAAATGTTGTGTCTTGGACGGCCATGGTTTCGGCTTATTCTAAGAGGGGGTATGCCTCTGAAGCCTTGAAACTTCTTGTACAGATGTTAAGATCAGGTATGGAGCCTAATGAGTTCACGTTTGTGACCATAATTACTTCATGTACAGGCGCTTCGGGATTGGACTTGGGAAGGAAAATCCACTCTCTAATAATAAGAAGAAATTTTGAGTGGCACATATTTGTTGGGAGCTCACTTCTTGACATGTATGCCAAAGCTGGTAGAATCTATGAAGCCCGAGGAGTTTTTGACTGCTTGCCAGAAAGGGATGTTGTTTCTTGCACTGCTATAATCTCTGGATATGCCCAGCTGGGTCCTGATGAGGAGACTTTGGAGCTACTCCGCCAGTTGCAGAGAGAAGGAATGACTTCGAACTACGTCACTTATGCGAGTGTGTCAACAGCATTATCAGGGCTTGCTGAATTGGACCTTGGCAGGCAAGTTCACAGCCACATCCTTTGTCGGGAACTGCCCTCATATGTGGTTCTTCTGAACTCGTTGATTGATATGTACTCTAAATGTGGAAACCTGAGTTACTCAAGAAGGATCTTTGATAGCATGACAGAGAGAACCATCATCTCGTGGAATGCTATGCTTGTAGGGTATAGTAAACACGGAATGGGTAAAGAGGTGGTTAAGCTTTTCAAATTAATGAAAGAGGAAAATAAGGTCAGACCAGACAGTGTCACTTTTTTAGTGGTTTTATTCGGTTGCAGCCATGGAGGAATGAAAGAGGGTTGGAATAGTTTTATGAGATGGAAAAAGGTGAAAATGGAATTGAGCCAGAGCTTGAACACTCTGGGTGTGTCGTTGATCTTCTTGGGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

399

Amino Acids

44.96

Weight (kDa)

8.64

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029423)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g05600
rosa_samantha	Rh3BG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	19, 114, 236, 709
AclWI	GGATC	1 cut(s)	920
AcoI	YGGCCR	3 cut(s)	3, 111, 348
AcsI	RAATTY	2 cut(s)	58, 529
AcuI	CTGAAG	2 cut(s)	169, 408
AfaI	GTAC	3 cut(s)	408, 472, 878
AfiI	CCNNNNNNNGG	1 cut(s)	829
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	397, 1012, 1159
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	7 cut(s)	98, 558, 584, 676, 703, 1006, 1155
AluI	AGCT	7 cut(s)	98, 558, 584, 676, 703, 1006, 1155
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	1 cut(s)	920
AlwNI	CAGNNNCTG	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	603
AoxI	GGCC	7 cut(s)	3, 111, 121, 180, 193, 301, 348
ApeKI	GCWGC	1 cut(s)	1080
ApoI	RAATTY	2 cut(s)	58, 529
AseI	ATTAAT	1 cut(s)	1016
Asp700I	GAANNNNTTC	1 cut(s)	733
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	2 cut(s)	680, 793
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	305, 1144
AsuII	TTCGAA	1 cut(s)	737
AvaI	CYCGRG	1 cut(s)	603
AvaII	GGWCC	2 cut(s)	680, 793
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	560
BarI	GAAGNNNNNNTAC	2 cut(s)	463, 495
BauI	CACGAG	1 cut(s)	946
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	1092
BccI	CCATC	2 cut(s)	947, 1116
BceAI	ACGGC	3 cut(s)	157, 288, 363
BclI	TGATCA	2 cut(s)	216, 261
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	480
BisI	GCNGC	2 cut(s)	114, 1081
BlsI	GCNGC	2 cut(s)	115, 1082
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	2 cut(s)	680, 793
BmeT110I	CYCGRG	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	680, 793
BmiI	GGNNCC	3 cut(s)	253, 432, 681
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
Bpu14I	TTCGAA	1 cut(s)	737
BpuEI	CTTGAG	2 cut(s)	146, 889
BpuMI	CCSGG	1 cut(s)	256
BsaJI	CCNNGG	4 cut(s)	351, 604, 796, 1084
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse1I	ACTGG	1 cut(s)	712
BseDI	CCNNGG	4 cut(s)	351, 604, 796, 1084
BseGI	GGATG	2 cut(s)	640, 819
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMII	CTCAG	2 cut(s)	80, 887
BseNI	ACTGG	1 cut(s)	712
BseRI	GAGGAG	2 cut(s)	621, 704
BseXI	GCAGC	1 cut(s)	1092
BseYI	CCCAGC	2 cut(s)	672, 676
BshFI	GGCC	7 cut(s)	5, 113, 123, 182, 195, 303, 350
BsiHKAI	GWGCWC	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	1 cut(s)	686
BsmI	GAATGC	1 cut(s)	958
BsnI	GGCC	7 cut(s)	5, 113, 123, 182, 195, 303, 350
BsoBI	CYCGRG	1 cut(s)	603
Bsp119I	TTCGAA	1 cut(s)	737
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp1407I	TGTACA	2 cut(s)	406, 470
Bsp143I	GATC	5 cut(s)	216, 261, 419, 912, 1179
Bsp19I	CCATGG	2 cut(s)	351, 1084
BspACI	CCGC	4 cut(s)	19, 114, 236, 709
BspANI	GGCC	7 cut(s)	5, 113, 123, 182, 195, 303, 350
BspCNI	CTCAG	2 cut(s)	81, 888
BspLI	GGNNCC	3 cut(s)	253, 432, 681
BspPI	GGATC	1 cut(s)	920
BspT104I	TTCGAA	1 cut(s)	737
BsrGI	TGTACA	2 cut(s)	406, 470
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	4 cut(s)	351, 604, 796, 1084
BssMI	GATC	5 cut(s)	216, 261, 419, 912, 1179
BssSI	CACGAG	1 cut(s)	946
BssT1I	CCWWGG	3 cut(s)	351, 796, 1084
Bst2BI	CACGAG	1 cut(s)	946
Bst4CI	ACNGT	2 cut(s)	83, 1049
BstAUI	TGTACA	2 cut(s)	406, 470
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	5 cut(s)	19, 301, 623, 783, 803
BstDEI	CTNAG	3 cut(s)	89, 369, 896
BstDSI	CCRYGG	2 cut(s)	351, 1084
BstF5I	GGATG	2 cut(s)	640, 819
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	5 cut(s)	219, 264, 422, 915, 1182
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	5 cut(s)	216, 261, 419, 912, 1179
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 389
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	1092
BstX2I	RGATCY	1 cut(s)	912
BstYI	RGATCY	1 cut(s)	912
BsuRI	GGCC	7 cut(s)	5, 113, 123, 182, 195, 303, 350
BtgI	CCRYGG	2 cut(s)	351, 1084
BtsCI	GGATG	2 cut(s)	640, 819
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	2 cut(s)	648, 1054
Cac8I	GCNNGC	5 cut(s)	19, 301, 623, 783, 803
CaiI	CAGNNNCTG	1 cut(s)	225
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	680, 793
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	3 cut(s)	407, 471, 877
CspCI	CAANNNNNGTGG	2 cut(s)	806, 841
CviAII	CATG	7 cut(s)	206, 214, 352, 468, 571, 925, 1085
CviQI	GTAC	3 cut(s)	407, 471, 877
DdeI	CTNAG	3 cut(s)	89, 369, 896
DpnI	GATC	5 cut(s)	218, 263, 421, 914, 1181
DpnII	GATC	5 cut(s)	216, 261, 419, 912, 1179
DraI	TTTAAA	1 cut(s)	64
EaeI	YGGCCR	3 cut(s)	3, 111, 348
EciI	GGCGGA	2 cut(s)	225, 698
Ecl136II	GAGCTC	1 cut(s)	558
Eco130I	CCWWGG	3 cut(s)	351, 796, 1084
Eco147I	AGGCCT	2 cut(s)	123, 182
Eco24I	GRGCYC	1 cut(s)	560
Eco47I	GGWCC	2 cut(s)	680, 793
Eco53kI	GAGCTC	1 cut(s)	558
Eco57I	CTGAAG	2 cut(s)	169, 408
Eco88I	CYCGRG	1 cut(s)	603
EcoICRI	GAGCTC	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	680
EcoT14I	CCWWGG	3 cut(s)	351, 796, 1084
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	3 cut(s)	351, 796, 1084
FaeI	CATG	7 cut(s)	209, 217, 355, 471, 574, 928, 1088
FatI	CATG	7 cut(s)	205, 213, 351, 467, 570, 924, 1084
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	2 cut(s)	216, 261
Fnu4HI	GCNGC	2 cut(s)	114, 1081
FokI	GGATG	2 cut(s)	647, 806
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	2 cut(s)	114, 1081
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	2 cut(s)	114, 1081
GsaI	CCCAGC	2 cut(s)	676, 680
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	7 cut(s)	5, 113, 123, 182, 195, 303, 350
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	7 cut(s)	209, 217, 355, 471, 574, 928, 1088
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	2 cut(s)	86, 765
HindII	GTYRAC	2 cut(s)	86, 765
HindIII	AAGCTT	1 cut(s)	1004
HinfI	GANTC	2 cut(s)	201, 591
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	2 cut(s)	305, 1144
Hpy166II	GTNNAC	6 cut(s)	86, 172, 444, 765, 811, 977
Hpy188I	TCNGA	6 cut(s)	188, 221, 251, 388, 858, 1040
Hpy188III	TCNNGA	6 cut(s)	483, 566, 663, 683, 830, 906
Hpy8I	GTNNAC	6 cut(s)	86, 172, 444, 765, 811, 977
Hpy99I	CGWCG	2 cut(s)	143, 317
HpyAV	CCTTC	6 cut(s)	49, 185, 193, 492, 719, 903
HpyCH4III	ACNGT	2 cut(s)	83, 1049
HpyCH4IV	ACGT	2 cut(s)	446, 744
HpyCH4V	TGCA	4 cut(s)	244, 648, 718, 1080
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 389
HpyF3I	CTNAG	3 cut(s)	89, 369, 896
HpySE526I	ACGT	2 cut(s)	446, 744
Hsp92II	CATG	7 cut(s)	209, 217, 355, 471, 574, 928, 1088
HspAI	GCGC	1 cut(s)	477
Ksp22I	TGATCA	2 cut(s)	216, 261
Kzo9I	GATC	5 cut(s)	216, 261, 419, 912, 1179
LmnI	GCTCC	4 cut(s)	80, 430, 555, 700
Lsp1109I	GCAGC	1 cut(s)	1092
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	2 cut(s)	446, 744
MaeIII	GTNAC	5 cut(s)	293, 451, 745, 899, 1051
MalI	GATC	5 cut(s)	218, 263, 421, 914, 1181
MboI	GATC	5 cut(s)	216, 261, 419, 912, 1179
MboII	GAAGA	6 cut(s)	27, 224, 259, 537, 845, 1174
MflI	RGATCY	1 cut(s)	912
MhlI	GDGCHC	1 cut(s)	560
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	11, 58, 459, 529, 788, 1013, 1142
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	3 cut(s)	84, 102, 1085
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	733
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	63, 158, 416, 1002, 1016
MslI	CAYNNNNRTG	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	676
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	958
MwoI	GCNNNNNNNGC	2 cut(s)	27, 389
NciI	CCSGG	1 cut(s)	256
NcoI	CCATGG	2 cut(s)	351, 1084
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	5 cut(s)	216, 261, 419, 912, 1179
NlaIII	CATG	7 cut(s)	209, 217, 355, 471, 574, 928, 1088
NlaIV	GGNNCC	3 cut(s)	253, 432, 681
NmuCI	GTSAC	4 cut(s)	293, 451, 745, 1051
NspI	RCATGY	1 cut(s)	574
NspV	TTCGAA	1 cut(s)	737
OliI	CACNNNNGTG	1 cut(s)	449
PceI	AGGCCT	2 cut(s)	123, 182
PciI	ACATGT	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	1 cut(s)	958
PdmI	GAANNNNTTC	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	591
PflFI	GACNNNGTC	1 cut(s)	1049
PkrI	GCNGC	2 cut(s)	115, 1082
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	680
PscI	ACATGT	1 cut(s)	570
PshBI	ATTAAT	1 cut(s)	1016
Psp124BI	GAGCTC	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	680
PspFI	CCCAGC	2 cut(s)	672, 676
PspN4I	GGNNCC	3 cut(s)	253, 432, 681
PspPI	GGNCC	2 cut(s)	680, 793
PspPPI	RGGWCCY	1 cut(s)	680
PstNI	CAGNNNCTG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	912
PsyI	GACNNNGTC	1 cut(s)	1049
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	3 cut(s)	408, 472, 878
RsaNI	GTAC	3 cut(s)	407, 471, 877
RseI	CAYNNNNRTG	1 cut(s)	449
SacI	GAGCTC	1 cut(s)	560
SaqAI	TTAA	5 cut(s)	63, 158, 416, 1002, 1016
SatI	GCNGC	2 cut(s)	114, 1081
Sau3AI	GATC	5 cut(s)	216, 261, 419, 912, 1179
Sau96I	GGNCC	2 cut(s)	680, 793
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	117
SfuI	TTCGAA	1 cut(s)	737
SinI	GGWCC	2 cut(s)	680, 793
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	125, 904
SmoI	CTYRAG	2 cut(s)	125, 904
Sse9I	AATT	7 cut(s)	11, 58, 459, 529, 788, 1013, 1142
SseBI	AGGCCT	2 cut(s)	123, 182
SsiI	CCGC	4 cut(s)	19, 114, 236, 709
SstI	GAGCTC	1 cut(s)	560
StuI	AGGCCT	2 cut(s)	123, 182
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	3 cut(s)	351, 796, 1084
TaaI	ACNGT	2 cut(s)	83, 1049
TaiI	ACGT	2 cut(s)	449, 747
TaqI	TCGA	3 cut(s)	138, 312, 737
TasI	AATT	7 cut(s)	11, 58, 459, 529, 788, 1013, 1142
TatI	WGTACW	3 cut(s)	406, 470, 876
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	591
Tru1I	TTAA	5 cut(s)	63, 158, 416, 1002, 1016
Tru9I	TTAA	5 cut(s)	63, 158, 416, 1002, 1016
TscAI	CASTG	2 cut(s)	655, 1054
TseFI	GTSAC	4 cut(s)	293, 451, 745, 1051
TseI	GCWGC	1 cut(s)	1080
Tsp45I	GTSAC	4 cut(s)	293, 451, 745, 1051
TspDTI	ATGAA	5 cut(s)	146, 456, 612, 1034, 1109
TspGWI	ACGGA	1 cut(s)	996
TspRI	CASTG	2 cut(s)	655, 1054
Tth111I	GACNNNGTC	1 cut(s)	1049
VpaK11BI	GGWCC	2 cut(s)	680, 793
VspI	ATTAAT	1 cut(s)	1016
XapI	RAATTY	2 cut(s)	58, 529
XceI	RCATGY	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.