Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0029423

Physical Location & Seq

Genomic Coordinates Forward (+)

26439168 .. 26440412

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG271400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCAGAGAAGACTACCGTTCTTAGTTTGCAACCGTAACCATGTAATCTCTACCCCATTTTTCCGCCAACTATCCCTTTCATCCTTCCCGCCAAATTCACCGGCTTTAACATCTCTATGCTCCAACGGTCAACTGAGAGAAGCCCTGGTCGAAATGACCGTTCAAGGCCTTGACATGAAGTTCGAAGGCTACTACACGCTCTTAAACGAGTGTGTAACCAGAAGGGCCTTGAGAGAAGGTCAAAGAGTCCATGCCCACATGATCAAAACCTGTTATCTTCCGCCGGTGCACCTCCGGACCCAGCTCATTGTTTTCTATAACAACTGTGATTGTCTGGGCGATGCACGCCGTGTGCTCGATGAAATGCCTCTGAGAAATGTGGTGTCGTGGACGGCCATGATTTCGGCTTATTCTAAGAGAGGGTACGCCTCCGAAGCCACCGATCTTTTTCTACAGATGTTAAGATCAGATGAGGGACCTAATGAGTTCACGTTTGCAACAGTACTTACTTCATGTACTGGTTCTTGGGGGTTTGACTTGGGCAGGCAAATCCACTCTCTTATAATAAAAACAAAGTATGAATCGCATATATTTGTTGGCAGCTCGCTTCTTGACATGTATGCCAAAGCTGGTAGAATGCTTGAAGCGAGACGAGTTTTTGACAGCTTGCCTGAAAGGGATGTTGTCTCTTGTACAGCTATAATCTCTGGCTATGCCCAGCAGGGTCTTGATGAAGAGGCTTTGGAGCTGTTCCGGCAGTTGCAGAGGGAAGGAATGACTGCGAACTATGTCACTTATGCCAGTGTTTTGACGGCATTATCAGGGCTTGCTGCTTTGGACCTTGGCAGGCAAGTTCACAACCATGTGCTTCGTTGTGAAGTGCCTTCATATGTGGTTCTTCAGAACTCCCTGATTGATATGTACTCAAAATGTGGAAAGCTAAGTTACTCAAGACGAGTTTTTGATACCATGCCCGAGAGAACTGTTATCTCATGGAATGCAATGCTCGTAGGGTATAGTAAACATGGAATGGGAGAAGAGTCATGGAGGAATGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

353

Amino Acids

40.03

Weight (kDa)

8.49

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	125 - 172	5.9e-10	PPR repeat family
PPR	PF01535	128 - 156	4e-07	PPR repeat
PPR_2	PF13041	226 - 273	6e-09	PPR repeat family
PPR	PF01535	229 - 258	3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029423)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g05600
rosa_samantha	Rh3BG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	563
AccIII	TCCGGA	1 cut(s)	294
AciI	CCGC	3 cut(s)	64, 89, 281
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	884
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	5 cut(s)	425, 504, 517, 694, 923
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	2 cut(s)	164, 644
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	7 cut(s)	304, 603, 629, 666, 698, 748, 940
AluI	AGCT	7 cut(s)	304, 603, 629, 666, 698, 748, 940
Alw21I	GWGCWC	2 cut(s)	291, 357
Alw26I	GTCTC	2 cut(s)	643, 691
Alw44I	GTGCAC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	974
Aor13HI	TCCGGA	1 cut(s)	294
AoxI	GGCC	3 cut(s)	166, 225, 393
ApaLI	GTGCAC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	600, 830
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspS9I	GGNCC	4 cut(s)	225, 297, 476, 838
AsuHPI	GGTGA	1 cut(s)	90
AsuII	TTCGAA	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	974
AvaII	GGWCC	3 cut(s)	297, 476, 838
BaeGI	GKGCMC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	291, 357
BbvI	GCAGC	2 cut(s)	612, 817
BceAI	ACGGC	3 cut(s)	333, 408, 828
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	643, 691
BfmI	CTRYAG	1 cut(s)	452
BisI	GCNGC	2 cut(s)	601, 831
BlsI	GCNGC	2 cut(s)	602, 832
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	3 cut(s)	297, 476, 838
BmeT110I	CYCGRG	1 cut(s)	974
BmgT120I	GGNCC	4 cut(s)	225, 297, 476, 838
BmiI	GGNNCC	2 cut(s)	299, 477
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	16
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	2 cut(s)	250, 934
BsaJI	CCNNGG	2 cut(s)	144, 841
BsaWI	WCCGGW	1 cut(s)	294
Bse118I	RCCGGY	2 cut(s)	100, 283
Bse1I	ACTGG	2 cut(s)	523, 801
Bse3DI	GCAATG	1 cut(s)	1008
BseAI	TCCGGA	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	144, 841
BseGI	GGATG	2 cut(s)	80, 685
BseMI	GCAATG	1 cut(s)	1008
BseMII	CTCAG	2 cut(s)	125, 362
BseNI	ACTGG	2 cut(s)	523, 801
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	612, 817
BseYI	CCCAGC	2 cut(s)	300, 717
BshFI	GGCC	3 cut(s)	168, 227, 395
BsiHKAI	GWGCWC	2 cut(s)	291, 357
BsiHKCI	CYCGRG	1 cut(s)	974
BsiSI	CCGG	4 cut(s)	101, 284, 295, 754
BslFI	GGGAC	1 cut(s)	489
BsmAI	GTCTC	2 cut(s)	643, 691
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	2 cut(s)	642, 1003
BsnI	GGCC	3 cut(s)	168, 227, 395
BsoBI	CYCGRG	1 cut(s)	974
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	291, 357
Bsp13I	TCCGGA	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	692
Bsp143I	GATC	3 cut(s)	261, 442, 464
BspACI	CCGC	3 cut(s)	64, 89, 281
BspANI	GGCC	3 cut(s)	168, 227, 395
BspCNI	CTCAG	2 cut(s)	126, 363
BspEI	TCCGGA	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	299, 477
BspT104I	TTCGAA	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	1008
BsrFI	RCCGGY	2 cut(s)	100, 283
BsrGI	TGTACA	1 cut(s)	692
BsrI	ACTGG	2 cut(s)	523, 801
BssAI	RCCGGY	2 cut(s)	100, 283
BssECI	CCNNGG	2 cut(s)	144, 841
BssMI	GATC	3 cut(s)	261, 442, 464
BssT1I	CCWWGG	1 cut(s)	841
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	7 cut(s)	18, 35, 128, 160, 326, 502, 985
Bst6I	CTCTTC	2 cut(s)	729, 1032
BstAUI	TGTACA	1 cut(s)	692
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	6 cut(s)	346, 545, 605, 668, 828, 848
BstDEI	CTNAG	5 cut(s)	22, 134, 371, 414, 941
BstF5I	GGATG	2 cut(s)	80, 685
BstKTI	GATC	3 cut(s)	264, 445, 467
BstMAI	GTCTC	2 cut(s)	643, 691
BstMBI	GATC	3 cut(s)	261, 442, 464
BstMWI	GCNNNNNNNGC	3 cut(s)	345, 434, 754
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	612, 817
BstV2I	GAAGAC	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	168, 227, 395
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	80, 685
BtsIMutI	CAGTG	1 cut(s)	808
Cac8I	GCNNGC	6 cut(s)	346, 545, 605, 668, 828, 848
Cfr10I	RCCGGY	2 cut(s)	100, 283
Cfr13I	GGNCC	4 cut(s)	225, 297, 476, 838
Csp6I	GTAC	5 cut(s)	424, 503, 516, 693, 922
CviQI	GTAC	5 cut(s)	424, 503, 516, 693, 922
DdeI	CTNAG	5 cut(s)	22, 134, 371, 414, 941
DpnI	GATC	3 cut(s)	263, 444, 466
DpnII	GATC	3 cut(s)	261, 442, 464
DraIII	CACNNNGTG	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	729, 1032
EarI	CTCTTC	2 cut(s)	729, 1032
EciI	GGCGGA	2 cut(s)	53, 270
Eco130I	CCWWGG	1 cut(s)	841
Eco147I	AGGCCT	1 cut(s)	168
Eco47I	GGWCC	3 cut(s)	297, 476, 838
Eco57I	CTGAAG	1 cut(s)	884
Eco88I	CYCGRG	1 cut(s)	974
EcoO109I	RGGNCCY	2 cut(s)	225, 476
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	841
Esp3I	CGTCTC	1 cut(s)	643
FaqI	GGGAC	1 cut(s)	489
FauI	CCCGC	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	889
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	601, 831
FokI	GGATG	2 cut(s)	67, 692
Fsp4HI	GCNGC	2 cut(s)	601, 831
GluI	GCNGC	2 cut(s)	601, 831
GsaI	CCCAGC	2 cut(s)	304, 721
HaeIII	GGCC	3 cut(s)	168, 227, 395
HapII	CCGG	4 cut(s)	101, 284, 295, 754
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HinfI	GANTC	3 cut(s)	246, 581, 1040
HpaII	CCGG	4 cut(s)	101, 284, 295, 754
HphI	GGTGA	1 cut(s)	90
Hpy166II	GTNNAC	6 cut(s)	131, 289, 390, 489, 856, 1022
Hpy188I	TCNGA	4 cut(s)	372, 433, 469, 903
Hpy188III	TCNNGA	4 cut(s)	295, 611, 728, 951
Hpy8I	GTNNAC	6 cut(s)	131, 289, 390, 489, 856, 1022
HpyAV	CCTTC	6 cut(s)	94, 179, 216, 230, 764, 894
HpyCH4III	ACNGT	7 cut(s)	18, 35, 128, 160, 326, 502, 985
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	7 cut(s)	4, 30, 289, 344, 497, 763, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	345, 434, 754
HpyF3I	CTNAG	5 cut(s)	22, 134, 371, 414, 941
HpySE526I	ACGT	1 cut(s)	491
Kpn2I	TCCGGA	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	261, 442, 464
LmnI	GCTCC	2 cut(s)	125, 745
Lsp1109I	GCAGC	2 cut(s)	612, 817
LweI	GCATC	1 cut(s)	331
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	4 cut(s)	35, 214, 790, 944
MalI	GATC	3 cut(s)	263, 444, 466
MboI	GATC	3 cut(s)	261, 442, 464
MboII	GAAGA	5 cut(s)	21, 269, 746, 890, 1049
MhlI	GDGCHC	2 cut(s)	291, 357
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	2 cut(s)	255, 1049
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	302, 378, 413, 439, 466, 730, 759, 1041
MroI	TCCGGA	1 cut(s)	294
MseI	TTAA	3 cut(s)	107, 203, 461
MslI	CAYNNNNRTG	2 cut(s)	115, 861
MspI	CCGG	4 cut(s)	101, 284, 295, 754
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	2 cut(s)	642, 1003
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	345, 434, 754
NdeI	CATATG	1 cut(s)	889
NdeII	GATC	3 cut(s)	261, 442, 464
NlaIV	GGNNCC	2 cut(s)	299, 477
NmuCI	GTSAC	1 cut(s)	790
NspI	RCATGY	1 cut(s)	619
NspV	TTCGAA	1 cut(s)	183
PceI	AGGCCT	1 cut(s)	168
PciI	ACATGT	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	2 cut(s)	642, 1003
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	2 cut(s)	602, 832
PleI	GAGTC	2 cut(s)	254, 1048
PpsI	GAGTC	2 cut(s)	254, 1048
PpuMI	RGGWCCY	1 cut(s)	476
PscI	ACATGT	1 cut(s)	615
PsiI	TTATAA	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	2 cut(s)	300, 717
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	299, 477
PspPI	GGNCC	4 cut(s)	225, 297, 476, 838
PspPPI	RGGWCCY	1 cut(s)	476
RsaI	GTAC	5 cut(s)	425, 504, 517, 694, 923
RsaNI	GTAC	5 cut(s)	424, 503, 516, 693, 922
RseI	CAYNNNNRTG	2 cut(s)	115, 861
SaqAI	TTAA	3 cut(s)	107, 203, 461
SatI	GCNGC	2 cut(s)	601, 831
Sau3AI	GATC	3 cut(s)	261, 442, 464
Sau96I	GGNCC	4 cut(s)	225, 297, 476, 838
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	2 cut(s)	255, 1049
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	291, 357
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	452
SfuI	TTCGAA	1 cut(s)	183
SgrAI	CRCCGGYG	1 cut(s)	283
SinI	GGWCC	3 cut(s)	297, 476, 838
SmiMI	CAYNNNNRTG	2 cut(s)	115, 861
SmlI	CTYRAG	2 cut(s)	229, 949
SmoI	CTYRAG	2 cut(s)	229, 949
Sse9I	AATT	1 cut(s)	94
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	3 cut(s)	64, 89, 281
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	841
TaaI	ACNGT	7 cut(s)	18, 35, 128, 160, 326, 502, 985
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	3 cut(s)	150, 183, 357
TasI	AATT	1 cut(s)	94
TatI	WGTACW	4 cut(s)	502, 515, 692, 921
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	3 cut(s)	107, 203, 461
Tru9I	TTAA	3 cut(s)	107, 203, 461
TscAI	CASTG	1 cut(s)	808
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	2 cut(s)	600, 830
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	7 cut(s)	69, 191, 375, 501, 594, 747, 876
TspRI	CASTG	1 cut(s)	808
VneI	GTGCAC	1 cut(s)	287
VpaK11BI	GGWCC	3 cut(s)	297, 476, 838
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	1 cut(s)	619
ZrmI	AGTACT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.