pycom12g07570

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0028718
Physical Location & Seq
Forward (+)
8022558 .. 8022965
408 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g07570.1

Sequence Viewer

Length: 408 bp
ATGCAGGGCAAAGTGGCGCCGGGAATTGAGACATTAACTTTGGTCATATCAGCAACGACCAAACATGGTATTCTTTCCCAAGGTGAAAGCTTGAATTGTTTGGCGATAAAGCGTGGGTTACGTGATCATGTTCTGCAGATGTCTTTGTTGGACCTCTATGCCAAGCGTGGACAATTAGGAAACTCAGATTGGCTGTTCAGAGCAATCCCTTGCGGGAACAACATTACTTGGGGTGCAATGATGTTTGGCTTCATTCAAAATGGTTGGTTTAGTGAAGCTGTTGGACTGTTTCGCGAAATGCAAGATTCAGGTCCGGAACCAAGGGCTGAGATACTAAGAAGCCTTGTTGATACATTTCCAAACCTGGGTGCTTTGAAGTTGGGAAACAAATTCATGGCTACATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

136

Amino Acids

14.8

Weight (kDa)

8.71

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 75 - 104 1.9e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028718)

Species Orthologous Gene IDs
malus_domestica MD12G1089800.v1.1
pyrus_communis pycom12g07570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 16
AccII CGCG 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 313
AciI CCGC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 3 cut(s) 94, 257, 376
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 2 cut(s) 90, 278
AluI AGCT 2 cut(s) 90, 278
Alw26I GTCTC 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 313
ApoI RAATTY 1 cut(s) 389
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 151, 311
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 2 cut(s) 151, 311
BanI GGYRCC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 365
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 21, 365
Bme18I GGWCC 2 cut(s) 151, 311
BmgT120I GGNCC 2 cut(s) 151, 311
BmiI GGNNCC 2 cut(s) 18, 318
BmrFI CCNGG 2 cut(s) 21, 365
BpuMI CCSGG 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 3 cut(s) 79, 320, 364
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 313
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 3 cut(s) 79, 320, 364
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 198, 318
Bsh1236I CGCG 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 20, 314
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 1 cut(s) 124
Bsp68I TCGCGA 1 cut(s) 294
BspACI CCGC 1 cut(s) 213
BspCNI CTCAG 2 cut(s) 197, 319
BspEI TCCGGA 1 cut(s) 313
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 18, 318
BspMAI CTGCAG 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 243
BssECI CCNNGG 3 cut(s) 79, 320, 364
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 2 cut(s) 79, 320
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 184, 327, 335
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 19, 363
BstSFI CTRYAG 1 cut(s) 134
BstUI CGCG 1 cut(s) 294
BtuMI TCGCGA 1 cut(s) 294
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 151, 311
CviAII CATG 3 cut(s) 65, 128, 394
CviJI RGCY 7 cut(s) 90, 193, 249, 278, 326, 342, 398
CviKI_1 RGCY 7 cut(s) 90, 193, 249, 278, 326, 342, 398
DdeI CTNAG 3 cut(s) 184, 327, 335
DinI GGCGCC 1 cut(s) 18
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 79, 320
Eco47I GGWCC 2 cut(s) 151, 311
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 2 cut(s) 79, 320
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 2 cut(s) 79, 320
FaeI CATG 3 cut(s) 68, 131, 397
FaiI YATR 6 cut(s) 47, 66, 129, 159, 395, 406
FatI CATG 3 cut(s) 64, 127, 393
FauI CCCGC 1 cut(s) 206
FbaI TGATCA 1 cut(s) 124
GlaI GCGC 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 20
HapII CCGG 2 cut(s) 20, 314
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 3 cut(s) 68, 131, 397
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 1 cut(s) 305
HpaII CCGG 2 cut(s) 20, 314
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 187, 200
Hpy188III TCNNGA 2 cut(s) 293, 314
Hpy8I GTNNAC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 4, 136, 236, 301
HpyF3I CTNAG 3 cut(s) 184, 327, 335
HpySE526I ACGT 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 3 cut(s) 68, 131, 397
HspAI GCGC 1 cut(s) 17
KasI GGCGCC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 313
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 33, 294, 327, 350, 377
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MluCI AATT 4 cut(s) 24, 94, 173, 389
Mly113I GGCGCC 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 129, 262
MnlI CCTC 1 cut(s) 164
MroI TCCGGA 1 cut(s) 313
MseI TTAA 1 cut(s) 35
MspI CCGG 2 cut(s) 20, 314
MspR9I CCNGG 2 cut(s) 21, 365
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 294
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 124
NlaIII CATG 3 cut(s) 68, 131, 397
NlaIV GGNNCC 2 cut(s) 18, 318
NruI TCGCGA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 305
PluTI GGCGCC 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 18, 318
PspPI GGNCC 2 cut(s) 151, 311
PstI CTGCAG 1 cut(s) 138
RruI TCGCGA 1 cut(s) 294
SaqAI TTAA 1 cut(s) 35
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 151, 311
ScrFI CCNGG 2 cut(s) 21, 365
SetI ASST 7 cut(s) 85, 92, 124, 156, 280, 313, 366
SfcI CTRYAG 1 cut(s) 134
SfoI GGCGCC 1 cut(s) 18
SinI GGWCC 2 cut(s) 151, 311
Sse9I AATT 4 cut(s) 24, 94, 173, 389
SsiI CCGC 1 cut(s) 213
SspDI GGCGCC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 19, 363
StyI CCWWGG 2 cut(s) 79, 320
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 124
TasI AATT 4 cut(s) 24, 94, 173, 389
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 241, 382
VpaK11BI GGWCC 2 cut(s) 151, 311
XapI RAATTY 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.