Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0024682

Physical Location & Seq

Genomic Coordinates Forward (+)

8261362 .. 8261762

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTTACACGGACTCTAGCAGCAGCTCTTATTGTTGCAAATGCAGTAGTTCAGTACCTTGTTTGGAAAGATTTATGGCCCTTACAAAGGAGGAGACAAAGGGAATTCTTCTATTTCGATATGGATGTTCTACTTAAGCTTGATTTGAAAGGTACTCGGAGGTTTTTCAATTCTTTTTTTGATCTAGAACCTCGCTATTGGCATGGATTCTTTAGAATAGAAATTATGGCCAAGGGGACTCCTCCTTTGGTAAAGATGATCAACAACTTGATACAAGATAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009536 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016853 GO:0016860 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045436 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

96

Amino Acids

11.51

Weight (kDa)

9.98

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024682)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g07680
rosa_samantha	Rh2CG303400 Rh2DG339400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	56, 154
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	148, 169
AluBI	AGCT	2 cut(s)	26, 139
AluI	AGCT	2 cut(s)	26, 139
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	2 cut(s)	77, 228
ApeKI	GCWGC	2 cut(s)	20, 23
ApoI	RAATTY	1 cut(s)	104
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AspS9I	GGNCC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	32, 35
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	17, 185
BfrI	CTTAAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	21, 24
BlsI	GCNGC	2 cut(s)	22, 25
BmgT120I	GGNCC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	106, 231
BseXI	GCAGC	2 cut(s)	32, 35
BshFI	GGCC	2 cut(s)	79, 230
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	79, 230
Bsp143I	GATC	2 cut(s)	181, 258
BspANI	GGCC	2 cut(s)	79, 230
BspTI	CTTAAG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	181, 258
BssT1I	CCWWGG	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	184, 261
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	181, 258
BstV1I	GCAGC	2 cut(s)	32, 35
BsuRI	GGCC	2 cut(s)	79, 230
BtsCI	GGATG	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	55, 153
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	4 cut(s)	26, 79, 139, 230
CviKI_1	RGCY	4 cut(s)	26, 79, 139, 230
CviQI	GTAC	2 cut(s)	55, 153
DpnI	GATC	2 cut(s)	183, 260
DpnII	GATC	2 cut(s)	181, 258
EaeI	YGGCCR	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	76, 122, 204, 227
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	21, 24
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	21, 24
FspBI	CTAG	2 cut(s)	17, 185
GluI	GCNGC	2 cut(s)	21, 24
HaeIII	GGCC	2 cut(s)	79, 230
Hin1II	CATG	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	13, 207, 238
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	38, 44
Hsp92II	CATG	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	181, 258
Lsp1109I	GCAGC	2 cut(s)	32, 35
MaeI	CTAG	2 cut(s)	17, 185
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	183, 260
MboI	GATC	2 cut(s)	181, 258
MboII	GAAGA	1 cut(s)	100
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	3 cut(s)	104, 169, 222
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	7, 232
MnlI	CCTC	4 cut(s)	84, 153, 201, 252
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	2 cut(s)	135, 286
Msp20I	TGGCCA	1 cut(s)	230
MspCI	CTTAAG	1 cut(s)	134
NdeII	GATC	2 cut(s)	181, 258
NlaIII	CATG	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	22, 25
PleI	GAGTC	2 cut(s)	7, 232
PpsI	GAGTC	2 cut(s)	7, 232
PspPI	GGNCC	1 cut(s)	78
RsaI	GTAC	2 cut(s)	56, 154
RsaNI	GTAC	2 cut(s)	55, 153
SaqAI	TTAA	2 cut(s)	135, 286
SatI	GCNGC	2 cut(s)	21, 24
Sau3AI	GATC	2 cut(s)	181, 258
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	2 cut(s)	7, 232
SetI	ASST	6 cut(s)	28, 60, 141, 154, 164, 193
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	104, 169, 222
SspMI	CTAG	2 cut(s)	17, 185
StyI	CCWWGG	1 cut(s)	231
TaqI	TCGA	1 cut(s)	117
TasI	AATT	3 cut(s)	104, 169, 222
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	2 cut(s)	135, 286
Tru9I	TTAA	2 cut(s)	135, 286
TseI	GCWGC	2 cut(s)	20, 23
TspGWI	ACGGA	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	134
XagI	CCTNNNNNAGG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	104
XbaI	TCTAGA	1 cut(s)	184
XspI	CTAG	2 cut(s)	17, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.