Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0024682

Physical Location & Seq

Genomic Coordinates Forward (+)

35633160 .. 35633477

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG303400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAACTTTCAGCAGAAGTTTGGAAAGATTTGTGGCCCATACAAAGGAGGAGACAAAGAGAGTTCTTCTGTTTTGGCATGTCCATTCTGCTCAAGCTGGATTTTGAATGCCACAAGAAGGTTTTTCGATGCATTTTTTGATCTAGAACCTCGTTATTGGCATGGATTCTTGTCATCTCGACTGTTTCTTCCCGATCTTGTATTTTTTGGGCTTTCACTGTTTTCTCATGCTTCAAATGCTAGTAGATTAGAAATAATGGGAAAGGGAACTATTCCTTTGGTAAAGATGATCAACAACTTGATACAGGATAGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009536 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016853 GO:0016860 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045436 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

105

Amino Acids

11.99

Weight (kDa)

8.93

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lycopene_cycl	PF05834	36 - 82	3.4e-11	Lycopene cyclase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024682)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g07680
rosa_samantha	Rh2CG303400 Rh2DG339400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	44, 117
AgsI	TTSAA	2 cut(s)	106, 234
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	2 cut(s)	143, 240
BmgT120I	GGNCC	1 cut(s)	35
BmsI	GCATC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 117
BseLI	CCNNNNNNNGG	2 cut(s)	44, 117
BseRI	GAGGAG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	44, 117
BsmAI	GTCTC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	139, 193, 288
BspANI	GGCC	1 cut(s)	36
BssMI	GATC	3 cut(s)	139, 193, 288
Bst4CI	ACNGT	2 cut(s)	183, 219
BstKTI	GATC	3 cut(s)	142, 196, 291
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	3 cut(s)	139, 193, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	3 cut(s)	78, 161, 227
CviJI	RGCY	3 cut(s)	36, 96, 211
CviKI_1	RGCY	3 cut(s)	36, 96, 211
DpnI	GATC	3 cut(s)	141, 195, 290
DpnII	GATC	3 cut(s)	139, 193, 288
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	3 cut(s)	81, 164, 230
FaiI	YATR	4 cut(s)	40, 79, 162, 228
FatI	CATG	3 cut(s)	77, 160, 226
FbaI	TGATCA	1 cut(s)	288
FspBI	CTAG	2 cut(s)	143, 240
HaeIII	GGCC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	81, 164, 230
HinfI	GANTC	1 cut(s)	165
Hpy188III	TCNNGA	3 cut(s)	143, 177, 191
HpyAV	CCTTC	1 cut(s)	111
HpyCH4III	ACNGT	2 cut(s)	183, 219
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	81, 164, 230
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	139, 193, 288
LpnPI	CCDG	2 cut(s)	82, 290
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	143, 240
MalI	GATC	3 cut(s)	141, 195, 290
MboI	GATC	3 cut(s)	139, 193, 288
MboII	GAAGA	2 cut(s)	57, 179
MnlI	CCTC	2 cut(s)	41, 159
Mph1103I	ATGCAT	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	3 cut(s)	139, 193, 288
NlaIII	CATG	3 cut(s)	81, 164, 230
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	1 cut(s)	81
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	35
Sau3AI	GATC	3 cut(s)	139, 193, 288
Sau96I	GGNCC	1 cut(s)	35
SetI	ASST	3 cut(s)	98, 122, 151
SfaNI	GCATC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
SspMI	CTAG	2 cut(s)	143, 240
TaaI	ACNGT	2 cut(s)	183, 219
TaqI	TCGA	2 cut(s)	126, 178
TfiI	GAWTC	1 cut(s)	165
TscAI	CASTG	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	81
XspI	CTAG	2 cut(s)	143, 240
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.