Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0022558

Physical Location & Seq

Genomic Coordinates Reverse (-)

10836112 .. 10838187

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGTGGAATTGGGATTGTTGTCCGGAAGCAGCAGCAAGTATGGTAGTAGTAAGCCGGTGAATGTGAGCTTCAGGATACCATATTACACTGAGTGGGGTCAAAGCCTGCTGGTGTGCGGCTCCGAGCCGGTGCTTGGTTCATGGAATATCAAAAAGGGTCTGCTACTGAGCCCTGTCCACCATGGGAAGGAGCTCATATGGTTTGGGACCATCTCTGTTCCAAAGGGCTTCAAATGTGACTACACTTACTATGTCGTCGATGAGAAGCGAAACGTTCTGAGATGGGAAATGGGAGAAAAGCGTAAAATATTATTGCCTGAGGGGATCCAAGATGGAGAGGCAGTGGAGCTTCATGACCTTTGGCAGGTGGGTGCTGATTCACTTCCTTTTAGAAGTGCCTTCAAAGACGTCATCTTTGGTCCGAAATTGAGTTTGGACATTGAAGTACCTCCCGGAGTCATCCGAAACACATTGGACCAGGATGGTAATTGTATCCAAATTGAAGATTATGATTCTGTTCTTGTCCATTTCAAAATCAGCTGTCCAAACATAGAAGAAGAAACAGCGGTAACTGCCCCTTATTCTCTAGTCAATTGTTCATACTTATCTGCAACTATACTTATATTTATTATTGGTAACACCTCAAAGTTGGGACAGTGGAATGTTCAGAATGGGCTTAAACTAAGCTACGCTGGTGAATCAATTTGGCATGCTGACTGTGTTTTGCCGAAGAGTGATTTCCCTATAAGATATCCTTGTCAAAGCTTTATCTTGGACAATTTGACCTTATGGTCCACATATAAGTATTGCAAATATGGCAACGCAGGAAACTTTTCTCCAGAAAATGGTCCAAACCGTGACCTTGTTCTTGACTCCTCAAAAACTCAACCGAGATACATTTTTCTTTCAGATGGCATGATGCGAGAAATGCCTTGGCGGGGTGCTGGTGTTGCAATCCCAATGTTTTCTGTTAGATCAGAAAATGATCTTGGAGTTGGAGAGTTTCTTGACCTGAAATTAGTTATTGACTGGGCTGCAGATTCTGGCTTTCATTTGGTTCAGCTTTTACCTATTAATGATACATCAGTGCATGGAATGTGGTGGGATTCATACCCCTACAGGTATGTTGACACCTCATTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0010297 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0030246 GO:0030247 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

CBM_20 Glyco_hydro_77

Protein Analysis

382

Amino Acids

42.86

Weight (kDa)

5.17

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_20	PF00686	20 - 111	5.6e-23	Starch binding domain
CBM_20	PF00686	208 - 295	2e-07	Starch binding domain
Glyco_hydro_77	PF02446	319 - 376	4.5e-11	4-alpha-glucanotransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022558)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g09060
rosa_multiflora	Rmu_sc0000840.1_g000021 Rmu_sc0038499.1_g000002
rosa_samantha	Rh3CG348900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
AasI	GACNNNNNNGTC	1 cut(s)	790
AatII	GACGTC	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	845
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	3 cut(s)	117, 566, 937
AclI	AACGTT	1 cut(s)	273
AclWI	GGATC	2 cut(s)	319, 332
AcuI	CTGAAG	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	408
AdeI	CACNNNGTG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	5 cut(s)	134, 187, 364, 845, 938
AgsI	TTSAA	5 cut(s)	232, 403, 443, 503, 532
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	4 cut(s)	416, 448, 972, 1004
AluBI	AGCT	7 cut(s)	69, 193, 349, 540, 687, 765, 1063
AluI	AGCT	7 cut(s)	69, 193, 349, 540, 687, 765, 1063
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	319, 332
AlwNI	CAGNNNCTG	1 cut(s)	1043
Aor13HI	TCCGGA	1 cut(s)	23
ApeKI	GCWGC	3 cut(s)	30, 33, 1034
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
AseI	ATTAAT	1 cut(s)	1074
Asp700I	GAANNNNTTC	1 cut(s)	832
AspS9I	GGNCC	5 cut(s)	207, 419, 475, 792, 848
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	70, 707
AvaII	GGWCC	5 cut(s)	207, 419, 475, 792, 848
AxyI	CCTNAGG	1 cut(s)	318
BaeI	ACNNNNGTAYC	2 cut(s)	1071, 1104
BamHI	GGATCC	1 cut(s)	324
BanII	GRGCYC	2 cut(s)	173, 195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	42, 45, 1021
BccI	CCATC	5 cut(s)	218, 276, 326, 476, 905
BciT130I	CCWGG	1 cut(s)	479
BciVI	GTATCC	2 cut(s)	69, 503
BcnI	CCSGG	1 cut(s)	453
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	2 cut(s)	1035, 1117
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	2 cut(s)	69, 503
BisI	GCNGC	4 cut(s)	31, 34, 118, 1035
BlsI	GCNGC	4 cut(s)	32, 35, 119, 1036
Bme1390I	CCNGG	2 cut(s)	453, 479
Bme18I	GGWCC	5 cut(s)	207, 419, 475, 792, 848
BmgT120I	GGNCC	5 cut(s)	207, 419, 475, 792, 848
BmiI	GGNNCC	3 cut(s)	121, 208, 326
BmrFI	CCNGG	2 cut(s)	453, 479
BmrI	ACTGGG	1 cut(s)	1039
BmsI	GCATC	1 cut(s)	909
BmuI	ACTGGG	1 cut(s)	1039
BpmI	CTGGAG	1 cut(s)	822
BpuMI	CCSGG	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	181, 932
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 187, 364, 845, 938
Bse118I	RCCGGY	2 cut(s)	55, 127
Bse1I	ACTGG	1 cut(s)	1034
Bse21I	CCTNAGG	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	181, 932
BseGI	GGATG	2 cut(s)	459, 487
BseLI	CCNNNNNNNGG	5 cut(s)	134, 187, 364, 845, 938
BseMII	CTCAG	4 cut(s)	81, 158, 269, 309
BseNI	ACTGG	1 cut(s)	1034
BseRI	GAGGAG	1 cut(s)	865
BseXI	GCAGC	3 cut(s)	42, 45, 1021
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	4 cut(s)	24, 56, 128, 453
BslFI	GGGAC	2 cut(s)	220, 666
BslI	CCNNNNNNNGG	5 cut(s)	134, 187, 364, 845, 938
BsmFI	GGGAC	2 cut(s)	220, 666
Bsp1286I	GDGCHC	2 cut(s)	173, 195
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	324, 974, 985
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	3 cut(s)	117, 566, 937
BspCNI	CTCAG	4 cut(s)	82, 159, 270, 310
BspEI	TCCGGA	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	121, 208, 326
BspMAI	CTGCAG	1 cut(s)	1039
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	319, 332
BsrFI	RCCGGY	2 cut(s)	55, 127
BsrI	ACTGG	1 cut(s)	1034
BssAI	RCCGGY	2 cut(s)	55, 127
BssECI	CCNNGG	2 cut(s)	181, 932
BssMI	GATC	3 cut(s)	324, 974, 985
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	181, 932
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	657, 719, 857
Bst6I	CTCTTC	1 cut(s)	725
BstACI	GRCGYC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	107, 711
BstDEI	CTNAG	5 cut(s)	90, 167, 278, 318, 683
BstDSI	CCRYGG	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	459, 487
BstKTI	GATC	3 cut(s)	327, 977, 988
BstMBI	GATC	3 cut(s)	324, 974, 985
BstMWI	GCNNNNNNNGC	4 cut(s)	572, 816, 928, 950
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	2 cut(s)	451, 477
BstSFI	CTRYAG	2 cut(s)	1035, 1117
BstV1I	GCAGC	3 cut(s)	42, 45, 1021
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	318
BsuI	GTATCC	2 cut(s)	69, 503
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	459, 487
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	4 cut(s)	87, 348, 662, 1092
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	107, 711
CaiI	CAGNNNCTG	1 cut(s)	1043
CciI	TCATGA	1 cut(s)	352
Cfr10I	RCCGGY	2 cut(s)	55, 127
Cfr13I	GGNCC	5 cut(s)	207, 419, 475, 792, 848
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	6 cut(s)	141, 182, 353, 710, 916, 1091
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	5 cut(s)	90, 167, 278, 318, 683
DpnI	GATC	3 cut(s)	326, 976, 987
DpnII	GATC	3 cut(s)	324, 974, 985
DraIII	CACNNNGTG	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	790
DseDI	GACNNNNNNGTC	1 cut(s)	790
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	181, 932
Eco24I	GRGCYC	2 cut(s)	173, 195
Eco32I	GATATC	1 cut(s)	752
Eco47I	GGWCC	5 cut(s)	207, 419, 475, 792, 848
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	752
EcoT14I	CCWWGG	2 cut(s)	181, 932
EcoT38I	GRGCYC	2 cut(s)	173, 195
ErhI	CCWWGG	2 cut(s)	181, 932
FaeI	CATG	6 cut(s)	144, 185, 356, 713, 919, 1094
FalI	AAGNNNNNCTT	2 cut(s)	739, 771
FaqI	GGGAC	2 cut(s)	220, 666
FatI	CATG	6 cut(s)	140, 181, 352, 709, 915, 1090
FauI	CCCGC	1 cut(s)	930
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	4 cut(s)	31, 34, 118, 1035
FokI	GGATG	2 cut(s)	446, 494
FriOI	GRGCYC	2 cut(s)	173, 195
Fsp4HI	GCNGC	4 cut(s)	31, 34, 118, 1035
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	4 cut(s)	31, 34, 118, 1035
GsuI	CTGGAG	1 cut(s)	822
HapII	CCGG	4 cut(s)	24, 56, 128, 453
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	6 cut(s)	144, 185, 356, 713, 919, 1094
HincII	GTYRAC	1 cut(s)	1129
HindII	GTYRAC	1 cut(s)	1129
HindIII	AAGCTT	1 cut(s)	763
HinfI	GANTC	7 cut(s)	377, 456, 512, 698, 872, 1040, 1106
HpaII	CCGG	4 cut(s)	24, 56, 128, 453
HphI	GGTGA	2 cut(s)	70, 707
Hpy166II	GTNNAC	3 cut(s)	178, 795, 1129
Hpy188I	TCNGA	7 cut(s)	124, 279, 423, 464, 669, 910, 979
Hpy188III	TCNNGA	6 cut(s)	24, 73, 353, 839, 869, 1007
Hpy8I	GTNNAC	3 cut(s)	178, 795, 1129
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	181, 409
HpyCH4III	ACNGT	3 cut(s)	657, 719, 857
HpyCH4IV	ACGT	2 cut(s)	273, 408
HpyCH4V	TGCA	5 cut(s)	611, 810, 953, 1037, 1090
HpyF10VI	GCNNNNNNNGC	4 cut(s)	572, 816, 928, 950
HpyF3I	CTNAG	5 cut(s)	90, 167, 278, 318, 683
HpySE526I	ACGT	2 cut(s)	273, 408
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	144, 185, 356, 713, 919, 1094
Kpn2I	TCCGGA	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	324, 974, 985
LmnI	GCTCC	3 cut(s)	125, 190, 346
Lsp1109I	GCAGC	3 cut(s)	42, 45, 1021
LweI	GCATC	1 cut(s)	909
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	2 cut(s)	273, 408
MaeIII	GTNAC	4 cut(s)	236, 568, 635, 857
MalI	GATC	3 cut(s)	326, 976, 987
MboI	GATC	3 cut(s)	324, 974, 985
MboII	GAAGA	4 cut(s)	515, 566, 569, 742
MfeI	CAATTG	1 cut(s)	592
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	173, 195
MluCI	AATT	8 cut(s)	8, 425, 487, 498, 592, 702, 778, 1016
MlyI	GAGTC	2 cut(s)	465, 866
MmeI	TCCRAC	1 cut(s)	976
MnlI	CCTC	6 cut(s)	313, 331, 459, 652, 886, 1144
MroI	TCCGGA	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	832
MseI	TTAA	2 cut(s)	678, 1074
MspA1I	CMGCKG	2 cut(s)	540, 566
MspI	CCGG	4 cut(s)	24, 56, 128, 453
MspR9I	CCNGG	2 cut(s)	453, 479
MunI	CAATTG	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	4 cut(s)	572, 816, 928, 950
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	3 cut(s)	324, 974, 985
NlaIII	CATG	6 cut(s)	144, 185, 356, 713, 919, 1094
NlaIV	GGNNCC	3 cut(s)	121, 208, 326
NmuCI	GTSAC	2 cut(s)	236, 857
NspI	RCATGY	1 cut(s)	713
PaeI	GCATGC	1 cut(s)	713
PagI	TCATGA	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	832
PfeI	GAWTC	5 cut(s)	377, 512, 698, 1040, 1106
PflMI	CCANNNNNTGG	1 cut(s)	845
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	4 cut(s)	32, 35, 119, 1036
PleI	GAGTC	2 cut(s)	464, 866
PpsI	GAGTC	2 cut(s)	464, 866
PshBI	ATTAAT	1 cut(s)	1074
Psp124BI	GAGCTC	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	121, 208, 326
PspPI	GGNCC	5 cut(s)	207, 419, 475, 792, 848
PstI	CTGCAG	1 cut(s)	1039
PstNI	CAGNNNCTG	1 cut(s)	1043
PsuI	RGATCY	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	540
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	678, 1074
SatI	GCNGC	4 cut(s)	31, 34, 118, 1035
Sau3AI	GATC	3 cut(s)	324, 974, 985
Sau96I	GGNCC	5 cut(s)	207, 419, 475, 792, 848
SchI	GAGTC	2 cut(s)	465, 866
ScrFI	CCNGG	2 cut(s)	453, 479
SduI	GDGCHC	2 cut(s)	173, 195
SfaNI	GCATC	1 cut(s)	909
SfcI	CTRYAG	2 cut(s)	1035, 1117
SinI	GGWCC	5 cut(s)	207, 419, 475, 792, 848
SphI	GCATGC	1 cut(s)	713
Sse9I	AATT	8 cut(s)	8, 425, 487, 498, 592, 702, 778, 1016
SsiI	CCGC	3 cut(s)	117, 566, 937
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	587
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	451, 477
StyI	CCWWGG	2 cut(s)	181, 932
TaaI	ACNGT	3 cut(s)	657, 719, 857
TaiI	ACGT	2 cut(s)	276, 411
TaqI	TCGA	1 cut(s)	258
TasI	AATT	8 cut(s)	8, 425, 487, 498, 592, 702, 778, 1016
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	5 cut(s)	377, 512, 698, 1040, 1106
Tru1I	TTAA	2 cut(s)	678, 1074
Tru9I	TTAA	2 cut(s)	678, 1074
TscAI	CASTG	4 cut(s)	94, 348, 662, 1092
TseFI	GTSAC	2 cut(s)	236, 857
TseI	GCWGC	3 cut(s)	30, 33, 1034
Tsp45I	GTSAC	2 cut(s)	236, 857
TspDTI	ATGAA	5 cut(s)	129, 341, 588, 1040, 1098
TspRI	CASTG	4 cut(s)	94, 348, 662, 1092
Van91I	CCANNNNNTGG	1 cut(s)	845
VpaK11BI	GGWCC	5 cut(s)	207, 419, 475, 792, 848
VspI	ATTAAT	1 cut(s)	1074
XagI	CCTNNNNNAGG	1 cut(s)	362
XceI	RCATGY	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	832
XspI	CTAG	1 cut(s)	587
ZraI	GACGTC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.