Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0022558

Physical Location & Seq

Genomic Coordinates Forward (+)

41648747 .. 41649940

Gene Structure 1194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG348900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGTAGAATTGGGATTGAGCAGGGCCAGCAAACCGGTGAGTGTGAGCTTCAGGATACCATATTACACACAGTGGGGCCAAAGCCTGGTGGTGTGCGGCTCCGAACCGGTGCTTGGTTCTTGGAATGTGAAGAGGGGTCTGCAGTTGAGTCCTGTTCACCAGGGTGATGAGCTCATATGGTTTGGCACCATTTCTGTCCCCAAAGGGTTTGGATCGTGCGAGTACAGTTACTACGTTGTGGATGATGATCGAAATGTTCTCCGATGGGAGATGGGAAGCAAGCGTCGGCTTCTTTTGCCTCAGGCCATTCAGGAAGGAGAGCTGCTTCACTTCCATGACTTTTGGCAGGTTGGTGCCGATGCAATTCCGTTCAGAAGTGCCTTCAAGGACGTCATCTTTCGTGGAGACTGGAGTTTGGAGGTTGACAAACCTCTAGGAGTCATCCAAAATTCATTGCAGAATGATGATTCTGTTCTCGTCCATTTCAAAATTTGCTGTCCAAATATAGAAGAAGGAACATCGATTTACATTACTGGTAGTACCTCAAAGTTGGGGAATTGGAAGGCACAGGATGGGCTTAAACTGAGCTATTCTGGTGAATCTACTTGGCATAAAGACTGTGTCTTGCTGAAAGGGGACTTCCCGATAAAATATCCTTTTGGAGCCTTTAAATCTTTAAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0010297 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0030246 GO:0030247 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

CBM_20 Glyco_hydro_77

Protein Analysis

228

Amino Acids

25.69

Weight (kDa)

6.52

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_20	PF00686	13 - 104	6.8e-23	Starch binding domain
CBM_20	PF00686	158 - 219	4.6e-09	Starch binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022558)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g09060
rosa_multiflora	Rmu_sc0000840.1_g000021 Rmu_sc0038499.1_g000002
rosa_samantha	Rh3CG348900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	2 cut(s)	185, 353
AccB7I	CCANNNNNTGG	1 cut(s)	85
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	448, 489
AcuI	CTGAAG	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	224, 541
AfiI	CCNNNNNNNGG	2 cut(s)	85, 113
AgeI	ACCGGT	2 cut(s)	34, 106
AgsI	TTSAA	2 cut(s)	385, 487
AjnI	CCWGG	2 cut(s)	84, 159
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	4 cut(s)	48, 172, 322, 588
AluI	AGCT	4 cut(s)	48, 172, 322, 588
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	3 cut(s)	24, 76, 303
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	2 cut(s)	448, 489
AsiGI	ACCGGT	2 cut(s)	34, 106
AspS9I	GGNCC	2 cut(s)	24, 76
AsuHPI	GGTGA	4 cut(s)	49, 149, 176, 608
AxyI	CCTNAGG	1 cut(s)	300
BanI	GGYRCC	2 cut(s)	185, 353
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	3 cut(s)	258, 265, 566
BciT130I	CCWGG	2 cut(s)	86, 161
BciVI	GTATCC	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	48
BisI	GCNGC	2 cut(s)	97, 323
BlsI	GCNGC	2 cut(s)	98, 324
Bme1390I	CCNGG	2 cut(s)	86, 161
BmgT120I	GGNCC	2 cut(s)	24, 76
BmiI	GGNNCC	5 cut(s)	77, 100, 187, 355, 664
BmrFI	CCNGG	2 cut(s)	86, 161
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	430
Bsa29I	ATCGAT	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	34, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 113
Bse118I	RCCGGY	2 cut(s)	34, 106
Bse1I	ACTGG	2 cut(s)	413, 538
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	452
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	86, 161
BseCI	ATCGAT	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	3 cut(s)	247, 441, 577
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	85, 113
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	314, 575
BseNI	ACTGG	2 cut(s)	413, 538
BseXI	GCAGC	1 cut(s)	309
BshFI	GGCC	3 cut(s)	26, 78, 305
BshNI	GGYRCC	2 cut(s)	185, 353
BshTI	ACCGGT	2 cut(s)	34, 106
BshVI	ATCGAT	1 cut(s)	521
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	35, 107
BslFI	GGGAC	2 cut(s)	182, 650
BslI	CCNNNNNNNGG	2 cut(s)	85, 113
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	2 cut(s)	182, 650
BsnI	GGCC	3 cut(s)	26, 78, 305
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	212, 247
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	3 cut(s)	26, 78, 305
BspCNI	CTCAG	2 cut(s)	313, 576
BspDI	ATCGAT	1 cut(s)	521
BspLI	GGNNCC	5 cut(s)	77, 100, 187, 355, 664
BspMAI	CTGCAG	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	2 cut(s)	185, 353
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	34, 106
BsrI	ACTGG	2 cut(s)	413, 538
BssAI	RCCGGY	2 cut(s)	34, 106
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	212, 247
BssNI	GRCGYC	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	86, 161
Bst4CI	ACNGT	3 cut(s)	72, 227, 620
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	28, 281
BstDEI	CTNAG	2 cut(s)	300, 584
BstF5I	GGATG	3 cut(s)	247, 441, 577
BstKTI	GATC	2 cut(s)	215, 250
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	2 cut(s)	212, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 295
BstNI	CCWGG	2 cut(s)	86, 161
BstSCI	CCNGG	2 cut(s)	84, 159
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	521
Bsu36I	CCTNAGG	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	26, 78, 305
BsuTUI	ATCGAT	1 cut(s)	521
BtsCI	GGATG	3 cut(s)	247, 441, 577
BtsIMutI	CAGTG	1 cut(s)	77
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	28, 281
Cfr10I	RCCGGY	2 cut(s)	34, 106
Cfr13I	GGNCC	2 cut(s)	24, 76
ClaI	ATCGAT	1 cut(s)	521
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	223, 540
CspAI	ACCGGT	2 cut(s)	34, 106
CviAII	CATG	1 cut(s)	335
CviQI	GTAC	2 cut(s)	223, 540
DdeI	CTNAG	2 cut(s)	300, 584
DpnI	GATC	2 cut(s)	214, 249
DpnII	GATC	2 cut(s)	212, 247
DraI	TTTAAA	2 cut(s)	670, 678
DraIII	CACNNNGTG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	34
Eco81I	CCTNAGG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	84, 159
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	1 cut(s)	338
FaiI	YATR	6 cut(s)	61, 176, 178, 336, 506, 612
FaqI	GGGAC	2 cut(s)	182, 650
FatI	CATG	1 cut(s)	334
FauNDI	CATATG	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	97, 323
FokI	GGATG	3 cut(s)	254, 428, 584
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	97, 323
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	2 cut(s)	97, 323
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	3 cut(s)	26, 78, 305
HapII	CCGG	2 cut(s)	35, 107
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	1 cut(s)	338
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	4 cut(s)	148, 438, 467, 599
HpaII	CCGG	2 cut(s)	35, 107
HphI	GGTGA	4 cut(s)	49, 149, 176, 608
Hpy166II	GTNNAC	2 cut(s)	157, 424
Hpy188I	TCNGA	3 cut(s)	103, 263, 374
Hpy188III	TCNNGA	3 cut(s)	52, 311, 643
Hpy8I	GTNNAC	2 cut(s)	157, 424
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	4 cut(s)	308, 391, 506, 556
HpyCH4III	ACNGT	3 cut(s)	72, 227, 620
HpyCH4IV	ACGT	2 cut(s)	234, 390
HpyCH4V	TGCA	3 cut(s)	142, 362, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 295
HpyF3I	CTNAG	2 cut(s)	300, 584
HpySE526I	ACGT	2 cut(s)	234, 390
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	2 cut(s)	212, 247
LmnI	GCTCC	2 cut(s)	104, 662
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	234, 390
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	214, 249
MboI	GATC	2 cut(s)	212, 247
MboII	GAAGA	2 cut(s)	142, 521
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	5 cut(s)	8, 363, 448, 489, 556
MlyI	GAGTC	2 cut(s)	157, 447
MnlI	CCTC	5 cut(s)	126, 309, 412, 441, 553
MseI	TTAA	3 cut(s)	579, 669, 677
MslI	CAYNNNNRTG	2 cut(s)	162, 333
MspI	CCGG	2 cut(s)	35, 107
MspR9I	CCNGG	2 cut(s)	86, 161
MvaI	CCWGG	2 cut(s)	86, 161
MwoI	GCNNNNNNNGC	2 cut(s)	27, 295
NdeI	CATATG	1 cut(s)	176
NdeII	GATC	2 cut(s)	212, 247
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	5 cut(s)	77, 100, 187, 355, 664
OliI	CACNNNNGTG	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	467, 599
PflFI	GACNNNGTC	1 cut(s)	620
PflMI	CCANNNNNTGG	1 cut(s)	85
PinAI	ACCGGT	2 cut(s)	34, 106
PkrI	GCNGC	2 cut(s)	98, 324
PleI	GAGTC	2 cut(s)	156, 446
PpsI	GAGTC	2 cut(s)	156, 446
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	84, 159
PspGI	CCWGG	2 cut(s)	84, 159
PspN4I	GGNNCC	5 cut(s)	77, 100, 187, 355, 664
PspPI	GGNCC	2 cut(s)	24, 76
PstI	CTGCAG	1 cut(s)	144
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	2 cut(s)	224, 541
RsaNI	GTAC	2 cut(s)	223, 540
RseI	CAYNNNNRTG	2 cut(s)	162, 333
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	579, 669, 677
SatI	GCNGC	2 cut(s)	97, 323
Sau3AI	GATC	2 cut(s)	212, 247
Sau96I	GGNCC	2 cut(s)	24, 76
SchI	GAGTC	2 cut(s)	157, 447
ScrFI	CCNGG	2 cut(s)	86, 161
SduI	GDGCHC	1 cut(s)	174
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	2 cut(s)	162, 333
Sse9I	AATT	5 cut(s)	8, 363, 448, 489, 556
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	84, 159
TaaI	ACNGT	3 cut(s)	72, 227, 620
TaiI	ACGT	2 cut(s)	237, 393
TaqI	TCGA	2 cut(s)	250, 521
TasI	AATT	5 cut(s)	8, 363, 448, 489, 556
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	467, 599
Tru1I	TTAA	3 cut(s)	579, 669, 677
Tru9I	TTAA	3 cut(s)	579, 669, 677
TscAI	CASTG	1 cut(s)	77
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	441
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	77
Tth111I	GACNNNGTC	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	85
XapI	RAATTY	2 cut(s)	448, 489
XspI	CTAG	1 cut(s)	434
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.