Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038499.1

Orthogroup ID

OG0022558

Physical Location & Seq

Genomic Coordinates Forward (+)

1286 .. 2083

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038499.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggtagaattgggattgagcagggccagcaaaccggtgagtgtgagcttcagaataccatattacacacagtggggccaaagcctggtggtgtgcggctccgaaccggtgcttggttcttggaatgtgaagaggggtctgctgttgagtcctgttcaccagggtgatgagctcatatggtttggcaccatttctgtccccaaagggtttggatcgtgcgagtacagttactacgttgtggatgatgatcgaaatgttctccgatgggagatgggaagcaagcgtcggcttcttttgcctcaggccattcaggaaggagagctgcttcacttccatgacttttggcaggttggtgccgatgcaattccgttcagaagtgccttcaaggacgtcatctttcgtggagactggagtttggaggttgagaaacctctaggagtcatccaaaattcattgcagaatgatggtaattgtactccaattgaactttctggctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0010297 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0030246 GO:0030247 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

CBM_20 Glyco_hydro_77

Protein Analysis

166

Amino Acids

18.74

Weight (kDa)

5.34

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022558)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g09060
rosa_multiflora	Rmu_sc0000840.1_g000021 Rmu_sc0038499.1_g000002
rosa_samantha	Rh3CG348900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	2 cut(s)	185, 353
AccB7I	CCANNNNNTGG	1 cut(s)	85
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	224, 475
AfiI	CCNNNNNNNGG	2 cut(s)	85, 113
AgeI	ACCGGT	2 cut(s)	34, 106
AgsI	TTSAA	2 cut(s)	385, 485
AjnI	CCWGG	2 cut(s)	84, 159
AjuI	GAANNNNNNNTTGG	3 cut(s)	96, 128, 472
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	3 cut(s)	48, 172, 322
AluI	AGCT	3 cut(s)	48, 172, 322
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	3 cut(s)	24, 76, 303
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	448
AsiGI	ACCGGT	2 cut(s)	34, 106
AspS9I	GGNCC	2 cut(s)	24, 76
AsuHPI	GGTGA	3 cut(s)	49, 149, 176
AxyI	CCTNAGG	1 cut(s)	300
BanI	GGYRCC	2 cut(s)	185, 353
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	3 cut(s)	258, 265, 458
BciT130I	CCWGG	2 cut(s)	86, 161
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	97, 323
BlsI	GCNGC	2 cut(s)	98, 324
Bme1390I	CCNGG	2 cut(s)	86, 161
BmgT120I	GGNCC	2 cut(s)	24, 76
BmiI	GGNNCC	4 cut(s)	77, 100, 187, 355
BmrFI	CCNGG	2 cut(s)	86, 161
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	34, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 113
Bse118I	RCCGGY	2 cut(s)	34, 106
Bse1I	ACTGG	1 cut(s)	413
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	452
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	86, 161
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	247, 441
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	85, 113
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	309
BshFI	GGCC	3 cut(s)	26, 78, 305
BshNI	GGYRCC	2 cut(s)	185, 353
BshTI	ACCGGT	2 cut(s)	34, 106
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	35, 107
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	85, 113
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	26, 78, 305
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	212, 247
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	3 cut(s)	26, 78, 305
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	4 cut(s)	77, 100, 187, 355
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	2 cut(s)	185, 353
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	34, 106
BsrI	ACTGG	1 cut(s)	413
BssAI	RCCGGY	2 cut(s)	34, 106
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	212, 247
BssNI	GRCGYC	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	86, 161
Bst4CI	ACNGT	2 cut(s)	72, 227
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	28, 281
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	247, 441
BstKTI	GATC	2 cut(s)	215, 250
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	2 cut(s)	212, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 295
BstNI	CCWGG	2 cut(s)	86, 161
BstSCI	CCNGG	2 cut(s)	84, 159
BstV1I	GCAGC	1 cut(s)	309
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	26, 78, 305
BtsCI	GGATG	2 cut(s)	247, 441
BtsIMutI	CAGTG	1 cut(s)	77
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	28, 281
Cfr10I	RCCGGY	2 cut(s)	34, 106
Cfr13I	GGNCC	2 cut(s)	24, 76
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	223, 474
CspAI	ACCGGT	2 cut(s)	34, 106
CviAII	CATG	1 cut(s)	335
CviQI	GTAC	2 cut(s)	223, 474
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	2 cut(s)	214, 249
DpnII	GATC	2 cut(s)	212, 247
DraIII	CACNNNGTG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	34
Eco81I	CCTNAGG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	84, 159
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	1 cut(s)	338
FaiI	YATR	4 cut(s)	61, 176, 178, 336
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	1 cut(s)	334
FauNDI	CATATG	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	97, 323
FokI	GGATG	2 cut(s)	254, 428
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	97, 323
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	2 cut(s)	97, 323
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	3 cut(s)	26, 78, 305
HapII	CCGG	2 cut(s)	35, 107
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	1 cut(s)	338
HinfI	GANTC	2 cut(s)	148, 438
HpaII	CCGG	2 cut(s)	35, 107
HphI	GGTGA	3 cut(s)	49, 149, 176
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	4 cut(s)	53, 103, 263, 374
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	308, 391
HpyCH4III	ACNGT	2 cut(s)	72, 227
HpyCH4IV	ACGT	2 cut(s)	234, 390
HpyCH4V	TGCA	2 cut(s)	362, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 295
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	2 cut(s)	234, 390
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	2 cut(s)	212, 247
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	234, 390
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	214, 249
MboI	GATC	2 cut(s)	212, 247
MboII	GAAGA	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	5 cut(s)	8, 363, 448, 469, 480
MlyI	GAGTC	2 cut(s)	157, 447
MnlI	CCTC	4 cut(s)	126, 309, 412, 441
MslI	CAYNNNNRTG	2 cut(s)	162, 333
MspI	CCGG	2 cut(s)	35, 107
MspR9I	CCNGG	2 cut(s)	86, 161
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	2 cut(s)	86, 161
MwoI	GCNNNNNNNGC	2 cut(s)	27, 295
NdeI	CATATG	1 cut(s)	176
NdeII	GATC	2 cut(s)	212, 247
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	4 cut(s)	77, 100, 187, 355
OliI	CACNNNNGTG	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	85
PinAI	ACCGGT	2 cut(s)	34, 106
PkrI	GCNGC	2 cut(s)	98, 324
PleI	GAGTC	2 cut(s)	156, 446
PpsI	GAGTC	2 cut(s)	156, 446
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	84, 159
PspGI	CCWGG	2 cut(s)	84, 159
PspN4I	GGNNCC	4 cut(s)	77, 100, 187, 355
PspPI	GGNCC	2 cut(s)	24, 76
RsaI	GTAC	2 cut(s)	224, 475
RsaNI	GTAC	2 cut(s)	223, 474
RseI	CAYNNNNRTG	2 cut(s)	162, 333
SacI	GAGCTC	1 cut(s)	174
SatI	GCNGC	2 cut(s)	97, 323
Sau3AI	GATC	2 cut(s)	212, 247
Sau96I	GGNCC	2 cut(s)	24, 76
SchI	GAGTC	2 cut(s)	157, 447
ScrFI	CCNGG	2 cut(s)	86, 161
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	8 cut(s)	50, 174, 237, 324, 351, 393, 423, 433
SfaNI	GCATC	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	162, 333
Sse9I	AATT	5 cut(s)	8, 363, 448, 469, 480
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	84, 159
TaaI	ACNGT	2 cut(s)	72, 227
TaiI	ACGT	2 cut(s)	237, 393
TaqI	TCGA	1 cut(s)	250
TasI	AATT	5 cut(s)	8, 363, 448, 469, 480
TatI	WGTACW	2 cut(s)	222, 473
TauI	GCSGC	1 cut(s)	99
TscAI	CASTG	1 cut(s)	77
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	441
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	448
XspI	CTAG	1 cut(s)	434
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.