Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0024672

Physical Location & Seq

Genomic Coordinates Forward (+)

12362039 .. 12362879

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGCACCCGCGCCGGTGGGCTTGGCCCTTCCATCTCCTCCAACCGCAGTTTTAAGAAGCATATTAACAATGCACAAGGAGGAGCCAAGGCAAGTGTAGCCACTGTAAACACGAAGGATTCCAGTATTGCTTCTGCGCAACACGACGTTGTACAAAATGGAGCCCGAGGTTCTGATACGCCCATTGCAAGCACGCTTCCTGGACAGCTGAAGCTTCAGCCTTTCAGAAAAGCTCCCGAACTTTTCCAAAGGCTCCGACTTCTCAGAGAAGCTCCGGAACTGTTCCAAAGGTTCCAAAGCTGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

103

Amino Acids

10.95

Weight (kDa)

10.94

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024672)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g21360 pycom12g10390 pycom17g15070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	2 cut(s)	10, 46
AcuI	CTGAAG	2 cut(s)	200, 230
AfaI	GTAC	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	5 cut(s)	208, 214, 233, 272, 300
AluI	AGCT	5 cut(s)	208, 214, 233, 272, 300
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	1 cut(s)	25
AspLEI	GCGC	2 cut(s)	14, 139
AspS9I	GGNCC	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	166
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	201
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	5 cut(s)	7, 85, 163, 254, 293
BmrFI	CCNGG	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	87, 166
BsaWI	WCCGGW	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	87, 166
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	28, 96
BseSI	GKGCMC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	15, 275
BsnI	GGCC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	8, 166
Bsp13I	TCCGGA	1 cut(s)	274
Bsp1407I	TGTACA	1 cut(s)	151
BspACI	CCGC	2 cut(s)	10, 46
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	276
BspEI	TCCGGA	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	5 cut(s)	7, 85, 163, 254, 293
BspT107I	GGYRCC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	87, 166
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	106, 282
BstAUI	TGTACA	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	190, 194
BstDEI	CTNAG	1 cut(s)	263
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	14, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	190, 194
CfoI	GCGC	2 cut(s)	14, 139
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	152
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	200, 230
Eco88I	CYCGRG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	87
FaiI	YATR	1 cut(s)	63
FauI	CCCGC	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	166
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	2 cut(s)	13, 138
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	2 cut(s)	15, 275
HhaI	GCGC	2 cut(s)	14, 139
Hin6I	GCGC	2 cut(s)	12, 137
HinP1I	GCGC	2 cut(s)	12, 137
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	2 cut(s)	15, 275
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	175, 227, 257, 266
Hpy188III	TCNNGA	2 cut(s)	236, 275
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	39, 109
HpyCH4III	ACNGT	2 cut(s)	106, 282
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	74, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	147
HspAI	GCGC	2 cut(s)	12, 137
Kpn2I	TCCGGA	1 cut(s)	274
LmnI	GCTCC	5 cut(s)	83, 161, 238, 258, 277
LpnPI	CCDG	5 cut(s)	28, 136, 186, 213, 288
MaeII	ACGT	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	8, 166
MmeI	TCCRAC	2 cut(s)	66, 280
MnlI	CCTC	3 cut(s)	49, 74, 161
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	2 cut(s)	54, 66
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	2 cut(s)	15, 275
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	98
NlaIV	GGNNCC	5 cut(s)	7, 85, 163, 254, 293
NsbI	TGCGCA	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	5 cut(s)	7, 85, 163, 254, 293
PspPI	GGNCC	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	54, 66
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	8, 166
SetI	ASST	8 cut(s)	150, 172, 210, 216, 235, 274, 293, 302
SgrAI	CRCCGGYG	1 cut(s)	14
SsiI	CCGC	2 cut(s)	10, 46
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	106, 282
TaiI	ACGT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	54, 66
Tru9I	TTAA	2 cut(s)	54, 66
TscAI	CASTG	1 cut(s)	109
TspRI	CASTG	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.