pycom17g15070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0024672
Physical Location & Seq
Forward (+)
12872769 .. 12873475
707 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g15070.2

Sequence Viewer

Length: 291 bp
ATGTTTTCCTACGACCGATTTAATGTAGGAGGTTCTGATACACCCGTTGCAAGCATGCTTCCTGGACAGCTGAAGCTTCAGCCTCCCAGAGAAGCTCCCGAACTATTCCAAAGGCTCCGACTTCTCAAGAACACCCACTACACTAGCGAAGGCCCCAGGAGATGCGTTCAAGGGCTTTGCCTTTTAGTTTGGGTGTATAAGCCTTGGTTTCATGAATGGGATGCAGAATTATTGACGAGAGTACCAAAAAAGCAGCGGTTGTGGATCCAGTTGAACCTGAGAAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.47

Weight (kDa)

10.02

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024672)

Species Orthologous Gene IDs
pyrus_communis pycom10g21360 pycom12g10390 pycom17g15070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 256
AclWI GGATC 2 cut(s) 259, 272
AcuI CTGAAG 2 cut(s) 62, 92
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 2 cut(s) 170, 274
AjnI CCWGG 2 cut(s) 61, 155
AluBI AGCT 3 cut(s) 70, 76, 95
AluI AGCT 3 cut(s) 70, 76, 95
AlwI GGATC 2 cut(s) 259, 272
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 152
BaeI ACNNNNGTAYC 4 cut(s) 30, 63, 225, 258
BamHI GGATCC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 265
BciT130I CCWGG 2 cut(s) 63, 157
BfaI CTAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme1390I CCNGG 2 cut(s) 63, 157
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 3 cut(s) 116, 154, 266
BmrFI CCNGG 2 cut(s) 63, 157
BmsI GCATC 2 cut(s) 152, 211
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 155, 203
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 2 cut(s) 63, 157
BseDI CCNNGG 2 cut(s) 155, 203
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 1 cut(s) 153
BsiEI CGRYCG 1 cut(s) 16
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 1 cut(s) 256
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 3 cut(s) 116, 154, 266
BspPI GGATC 2 cut(s) 259, 272
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 155, 203
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 2 cut(s) 63, 157
BstC8I GCNNGC 2 cut(s) 52, 56
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 16
BstNI CCWGG 2 cut(s) 63, 157
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 61, 155
BstV1I GCAGC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 52, 56
CciI TCATGA 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 55, 212
CviJI RGCY 8 cut(s) 70, 76, 82, 95, 115, 153, 175, 202
CviKI_1 RGCY 8 cut(s) 70, 76, 82, 95, 115, 153, 175, 202
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 62, 92
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 61, 155
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 58, 215
FaiI YATR 3 cut(s) 56, 198, 213
FatI CATG 2 cut(s) 54, 211
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 254
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 2 cut(s) 58, 215
HindIII AAGCTT 1 cut(s) 74
Hpy188I TCNGA 3 cut(s) 37, 119, 290
Hpy188III TCNNGA 3 cut(s) 98, 127, 212
HpyAV CCTTC 2 cut(s) 143, 276
HpyCH4V TGCA 2 cut(s) 50, 224
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 2 cut(s) 58, 215
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 2 cut(s) 100, 120
LpnPI CCDG 6 cut(s) 48, 75, 100, 142, 169, 281
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 2 cut(s) 152, 211
MaeI CTAG 1 cut(s) 144
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MflI RGATCY 1 cut(s) 264
MluCI AATT 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 2 cut(s) 23, 93
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 2 cut(s) 70, 256
MspR9I CCNGG 2 cut(s) 63, 157
MvaI CCWGG 2 cut(s) 63, 157
NdeII GATC 1 cut(s) 264
NlaIII CATG 2 cut(s) 58, 215
NlaIV GGNNCC 3 cut(s) 116, 154, 266
NspI RCATGY 1 cut(s) 58
PaeI GCATGC 1 cut(s) 58
PagI TCATGA 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 61
PkrI GCNGC 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 61, 155
PspGI CCWGG 2 cut(s) 61, 155
PspN4I GGNNCC 3 cut(s) 116, 154, 266
PspPI GGNCC 1 cut(s) 152
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
PsuI RGATCY 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 63, 157
SetI ASST 6 cut(s) 34, 72, 78, 97, 279, 287
SfaNI GCATC 2 cut(s) 152, 211
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SphI GCATGC 1 cut(s) 58
Sse9I AATT 1 cut(s) 227
SsiI CCGC 1 cut(s) 256
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 61, 155
StyI CCWWGG 1 cut(s) 203
TaqII GACCGA 1 cut(s) 30
TasI AATT 1 cut(s) 227
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 200, 228
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.