Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0029257

Physical Location & Seq

Genomic Coordinates Forward (+)

12729260 .. 12730186

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCTGGCCCTGCGGCCATTGGCGATAAAGTGGAAGAAGCACAAACTTTTGCAGAGAGAACAAAATCTCTTGATGTCAGTTCCAGAGAAGACAGAGAATCCATAATAAATAATGGTGAACTTGCTGATACTTCTGAAATTGCCGCCTTTAGAGTCAGGGAGCTATTACTTCCGAATAGGGAGTCCTATTCTGGACCTGTGCTTGGCAACATCCCTGAAGGAAAGGGAAAATATGTCTGGTCAGATGGCTGCATATATGAGGGTGAATGGAGACGGGGGATGAGACATGGGAATGGAAAAATTATTTGGTCTTCAGGTGCCGTTTATGAGGGCGAGTTTTCAGGCGGATATATGCATGGCACAGGGACCTACATTGGATCGGATAAGTTGACTTATAAGGGGCGATGGCGGTTAAATCTCAAACATGGTTTGGGATATCAAGTCTATCCTAATGGAGATGCCTTTGAAGGCTCTTGGATGCAGGGGTTGCCAGAAGGGCCTGGCAAGTATACATGGGTAAATGGAAATGTTTATCTTGGAAATATGAAGGGAGGGAAAATGTCAGGGAAAGGAACTCTCACATGGACCAATGGGGATTCATTTGAAGGAAGCTGGTTGAATGGCATGATGCATGGATTTGGAGTATACACGTGGAGTGATGGAGGCTTCTATGTTGGAACTTGGACCCGCGGTTTAAAGGACGGGAAAGGGTCATTTTATCCAAAAGGCAGCAGACTTCCAGCAGTAGAAGAACTTTACCTGAATGCTTTGAGGAAACGAGGGCTCTTGCCAGATTTAAGAAAACAGAACAATGCACATATCCATCATGCTGGTTCAGGGGATATGGGAAATGCGAAGATTGGAGAGAGCCTGCAGGGATCGATCATCGTGCTTCAGCCGACAAAATCTCTACTAGAAATCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

309

Amino Acids

33.77

Weight (kDa)

8.33

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORN	PF02493	86 - 107	5e-08	MORN repeat
MORN	PF02493	155 - 177	4.2e-07	MORN repeat
MORN	PF02493	201 - 222	4e-08	MORN repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029257)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g08290 pycom12g10680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	317
AccI	GTMKAC	2 cut(s)	509, 645
AccII	CGCG	1 cut(s)	690
AciI	CCGC	6 cut(s)	14, 144, 345, 409, 688, 690
AclWI	GGATC	2 cut(s)	385, 886
AcoI	YGGCCR	1 cut(s)	15
AcuI	CTGAAG	3 cut(s)	237, 297, 878
AcvI	CACGTG	1 cut(s)	651
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	3 cut(s)	467, 605, 619
AjnI	CCWGG	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	2 cut(s)	163, 612
AluI	AGCT	2 cut(s)	163, 612
Alw26I	GTCTC	2 cut(s)	265, 277
AlwI	GGATC	2 cut(s)	385, 886
AoxI	GGCC	3 cut(s)	7, 15, 497
ApeKI	GCWGC	2 cut(s)	249, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspS9I	GGNCC	6 cut(s)	8, 194, 366, 497, 585, 684
AsuHPI	GGTGA	2 cut(s)	128, 275
AvaII	GGWCC	4 cut(s)	194, 366, 585, 684
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	786
BbrPI	CACGTG	1 cut(s)	651
BbsI	GAAGAC	2 cut(s)	96, 303
BbvI	GCAGC	2 cut(s)	236, 741
BccI	CCATC	4 cut(s)	239, 399, 653, 831
BceAI	ACGGC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	871, 905
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	265, 277
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	1 cut(s)	872
BglI	GCCNNNNNGGC	1 cut(s)	496
BisI	GCNGC	4 cut(s)	15, 144, 250, 730
BlsI	GCNGC	4 cut(s)	16, 145, 251, 731
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	4 cut(s)	194, 366, 585, 684
BmgT120I	GGNCC	6 cut(s)	8, 194, 366, 497, 585, 684
BmiI	GGNNCC	3 cut(s)	319, 367, 686
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	3 cut(s)	448, 468, 618
BpiI	GAAGAC	2 cut(s)	96, 303
Bsa29I	ATCGAT	1 cut(s)	881
BsaAI	YACGTR	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	881
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	3 cut(s)	210, 285, 483
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	236, 741
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	3 cut(s)	9, 17, 499
BshNI	GGYRCC	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	881
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	265, 277
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	769
BsnI	GGCC	3 cut(s)	9, 17, 499
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	3 cut(s)	377, 878, 882
BspACI	CCGC	6 cut(s)	14, 144, 345, 409, 688, 690
BspANI	GGCC	3 cut(s)	9, 17, 499
BspDI	ATCGAT	1 cut(s)	881
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	3 cut(s)	319, 367, 686
BspMAI	CTGCAG	1 cut(s)	876
BspPI	GGATC	2 cut(s)	385, 886
BspT107I	GGYRCC	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	3 cut(s)	377, 878, 882
BssNAI	GTATAC	2 cut(s)	510, 646
Bst1107I	GTATAC	2 cut(s)	510, 646
Bst2UI	CCWGG	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	872
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	3 cut(s)	210, 285, 483
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	3 cut(s)	380, 881, 885
BstMAI	GTCTC	2 cut(s)	265, 277
BstMBI	GATC	3 cut(s)	377, 878, 882
BstMWI	GCNNNNNNNGC	2 cut(s)	487, 496
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	872
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	236, 741
BstV2I	GAAGAC	2 cut(s)	96, 303
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstZ17I	GTATAC	2 cut(s)	510, 646
Bsu15I	ATCGAT	1 cut(s)	881
BsuRI	GGCC	3 cut(s)	9, 17, 499
BsuTUI	ATCGAT	1 cut(s)	881
BtgI	CCRYGG	1 cut(s)	688
BtgZI	GCGATG	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	210, 285, 483
Cac8I	GCNNGC	1 cut(s)	872
Cfr13I	GGNCC	6 cut(s)	8, 194, 366, 497, 585, 684
Cfr42I	CCGCGG	1 cut(s)	691
ClaI	ATCGAT	1 cut(s)	881
CviAII	CATG	8 cut(s)	287, 356, 425, 513, 582, 625, 632, 827
DpnI	GATC	3 cut(s)	379, 880, 884
DpnII	GATC	3 cut(s)	377, 878, 882
DraI	TTTAAA	1 cut(s)	696
EaeI	YGGCCR	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	786
Eco32I	GATATC	1 cut(s)	437
Eco47I	GGWCC	4 cut(s)	194, 366, 585, 684
Eco57I	CTGAAG	3 cut(s)	237, 297, 878
Eco72I	CACGTG	1 cut(s)	651
EcoO109I	RGGNCCY	2 cut(s)	366, 497
EcoRII	CCWGG	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	437
EcoT22I	ATGCAT	2 cut(s)	357, 633
EcoT38I	GRGCYC	1 cut(s)	786
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	8 cut(s)	290, 359, 428, 516, 585, 628, 635, 830
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	8 cut(s)	286, 355, 424, 512, 581, 624, 631, 826
FauI	CCCGC	1 cut(s)	695
FblI	GTMKAC	2 cut(s)	509, 645
Fnu4HI	GCNGC	4 cut(s)	15, 144, 250, 730
FokI	GGATG	3 cut(s)	197, 292, 490
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	4 cut(s)	15, 144, 250, 730
FspBI	CTAG	1 cut(s)	914
GluI	GCNGC	4 cut(s)	15, 144, 250, 730
HaeIII	GGCC	3 cut(s)	9, 17, 499
Hin1II	CATG	8 cut(s)	290, 359, 428, 516, 585, 628, 635, 830
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	4 cut(s)	98, 153, 182, 596
HphI	GGTGA	2 cut(s)	128, 275
Hpy166II	GTNNAC	4 cut(s)	119, 390, 510, 646
Hpy188I	TCNGA	4 cut(s)	136, 174, 244, 382
Hpy188III	TCNNGA	3 cut(s)	71, 84, 192
Hpy8I	GTNNAC	4 cut(s)	119, 390, 510, 646
HpyAV	CCTTC	5 cut(s)	212, 461, 488, 541, 599
HpyCH4IV	ACGT	1 cut(s)	650
HpyCH4V	TGCA	7 cut(s)	53, 252, 355, 481, 631, 815, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	487, 496
HpySE526I	ACGT	1 cut(s)	650
Hsp92II	CATG	8 cut(s)	290, 359, 428, 516, 585, 628, 635, 830
KspI	CCGCGG	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	377, 878, 882
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	2 cut(s)	236, 741
LweI	GCATC	3 cut(s)	448, 468, 618
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	1 cut(s)	650
MalI	GATC	3 cut(s)	379, 880, 884
MboI	GATC	3 cut(s)	377, 878, 882
MboII	GAAGA	5 cut(s)	47, 101, 303, 761, 868
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	2 cut(s)	138, 300
MlyI	GAGTC	2 cut(s)	162, 191
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	6 cut(s)	253, 322, 545, 656, 765, 773
Mph1103I	ATGCAT	2 cut(s)	357, 633
MseI	TTAA	4 cut(s)	413, 695, 797, 925
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	690
MspR9I	CCNGG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	769
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	487, 496
NdeII	GATC	3 cut(s)	377, 878, 882
NlaIII	CATG	8 cut(s)	290, 359, 428, 516, 585, 628, 635, 830
NlaIV	GGNNCC	3 cut(s)	319, 367, 686
NsiI	ATGCAT	2 cut(s)	357, 633
PctI	GAATGC	1 cut(s)	769
PfeI	GAWTC	2 cut(s)	98, 596
PkrI	GCNGC	4 cut(s)	16, 145, 251, 731
PleI	GAGTC	2 cut(s)	161, 190
PmaCI	CACGTG	1 cut(s)	651
PmlI	CACGTG	1 cut(s)	651
PpsI	GAGTC	2 cut(s)	161, 190
Ppu21I	YACGTR	1 cut(s)	651
PpuMI	RGGWCCY	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	499
PspCI	CACGTG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	3 cut(s)	319, 367, 686
PspPI	GGNCC	6 cut(s)	8, 194, 366, 497, 585, 684
PspPPI	RGGWCCY	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	876
RseI	CAYNNNNRTG	1 cut(s)	291
SacII	CCGCGG	1 cut(s)	691
SaqAI	TTAA	4 cut(s)	413, 695, 797, 925
SatI	GCNGC	4 cut(s)	15, 144, 250, 730
Sau3AI	GATC	3 cut(s)	377, 878, 882
Sau96I	GGNCC	6 cut(s)	8, 194, 366, 497, 585, 684
SbfI	CCTGCAGG	1 cut(s)	876
SchI	GAGTC	2 cut(s)	162, 191
ScrFI	CCNGG	1 cut(s)	501
SdaI	CCTGCAGG	1 cut(s)	876
SduI	GDGCHC	1 cut(s)	786
SetI	ASST	7 cut(s)	165, 199, 319, 371, 614, 653, 762
SfaNI	GCATC	3 cut(s)	448, 468, 618
SfcI	CTRYAG	1 cut(s)	872
Sfr303I	CCGCGG	1 cut(s)	691
SgrBI	CCGCGG	1 cut(s)	691
SinI	GGWCC	4 cut(s)	194, 366, 585, 684
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse8387I	CCTGCAGG	1 cut(s)	876
Sse9I	AATT	2 cut(s)	138, 300
SsiI	CCGC	6 cut(s)	14, 144, 345, 409, 688, 690
SspMI	CTAG	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	499
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	1 cut(s)	881
TasI	AATT	2 cut(s)	138, 300
TauI	GCSGC	2 cut(s)	17, 146
TfiI	GAWTC	2 cut(s)	98, 596
Tru1I	TTAA	4 cut(s)	413, 695, 797, 925
Tru9I	TTAA	4 cut(s)	413, 695, 797, 925
TseI	GCWGC	2 cut(s)	249, 729
TspDTI	ATGAA	2 cut(s)	560, 588
VpaK11BI	GGWCC	4 cut(s)	194, 366, 585, 684
XmiI	GTMKAC	2 cut(s)	509, 645
XspI	CTAG	1 cut(s)	914
Zsp2I	ATGCAT	2 cut(s)	357, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.