pycom12g11810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0029429
Physical Location & Seq
Forward (+)
14209556 .. 14210609
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g11810.4

Sequence Viewer

Length: 540 bp
ATGGCGAAGGCCACCCGGGTGACCAACGGACATATCACGATTGCATACAACTATCGACATCGAGCCGTACCAACGCTGGAGCAGCATAGTGCATTGGCATTGCTCACATCGTTCGTACCTATTGCCCTACGCAATGGAAGTCTTGGAAGGCAATGCCATATGAGACAAACTGCAATTTTGATGACATCAATGACAATATGTTGGCGTACGTCAACAGGCTCTTCGCTGAACGGTACAAGCAGTGGAAGAGCGACTTGCACCAATATTTTCAGACATTTGTTGATCCACAAATCGCTCTTGAGGAGGGTTGCCAGAAGGAGTTTGAGGACCAGGAAGATAATTGGGTTTGGCTCTGCAGTCATTTTCAAGAGCCCGGTTATGTGGGGGGGTTCAAAATTCTCGGAGATCGATGTCTTTGGAGACGTTTATGTTCAACCTAGGGATGAGTTGGCCGAGTCCCTTCATGTGACAATGATGGAGAAGAGTGACACACCTCGATCGAAGTCAAGACGTGTTGGCCGTCACGTGAGGGTGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

180

Amino Acids

20.08

Weight (kDa)

11.53

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029429)

Species Orthologous Gene IDs
pyrus_communis pycom12g11810 pycom17g17300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 2 cut(s) 450, 517
AcsI RAATTY 1 cut(s) 395
AcvI CACGTG 1 cut(s) 526
AfaI GTAC 4 cut(s) 69, 117, 208, 235
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 3 cut(s) 367, 393, 434
AjiI CACGTC 1 cut(s) 512
AjnI CCWGG 1 cut(s) 329
AleI CACNNNNGTG 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 157, 414
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 3 cut(s) 9, 450, 517
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 395
AspA2I CCTAGG 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 327
AsuC2I CCSGG 3 cut(s) 16, 17, 374
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 1 cut(s) 327
AvrII CCTAGG 1 cut(s) 437
BanII GRGCYC 1 cut(s) 374
BbrPI CACGTG 1 cut(s) 526
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 469
BceAI ACGGC 2 cut(s) 50, 504
BciT130I CCWGG 1 cut(s) 331
BcnI CCSGG 3 cut(s) 16, 17, 374
BcoDI GTCTC 2 cut(s) 157, 414
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 1 cut(s) 83
BlnI CCTAGG 1 cut(s) 437
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 4 cut(s) 16, 17, 331, 374
Bme18I GGWCC 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 15
BmgBI CACGTC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 327
BmrFI CCNGG 4 cut(s) 16, 17, 331, 374
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 319
BpuMI CCSGG 3 cut(s) 16, 17, 374
Bsa29I ATCGAT 1 cut(s) 408
BsaAI YACGTR 1 cut(s) 526
BsaJI CCNNGG 2 cut(s) 15, 437
Bse3DI GCAATG 3 cut(s) 98, 139, 158
BseBI CCWGG 1 cut(s) 331
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 15, 437
BseGI GGATG 1 cut(s) 448
BseMI GCAATG 3 cut(s) 98, 139, 158
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 500
BshFI GGCC 3 cut(s) 11, 452, 519
BshVI ATCGAT 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 500
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 2 cut(s) 16, 374
BsiWI CGTACG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 157, 414
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 3 cut(s) 11, 452, 519
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 3 cut(s) 282, 405, 497
BspANI GGCC 3 cut(s) 11, 452, 519
BspDI ATCGAT 1 cut(s) 408
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 1 cut(s) 277
BspQI GCTCTTC 2 cut(s) 226, 241
BsrDI GCAATG 3 cut(s) 98, 139, 158
BssECI CCNNGG 2 cut(s) 15, 437
BssMI GATC 3 cut(s) 282, 405, 497
BssT1I CCWWGG 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 3 cut(s) 226, 241, 476
BstBAI YACGTR 1 cut(s) 526
BstEII GGTNACC 1 cut(s) 19
BstF5I GGATG 1 cut(s) 448
BstKTI GATC 3 cut(s) 285, 408, 500
BstMAI GTCTC 2 cut(s) 157, 414
BstMBI GATC 3 cut(s) 282, 405, 497
BstMCI CGRYCG 1 cut(s) 500
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 331
BstPI GGTNACC 1 cut(s) 19
BstSCI CCNGG 4 cut(s) 14, 15, 329, 372
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 408
BsuRI GGCC 3 cut(s) 11, 452, 519
BsuTUI ATCGAT 1 cut(s) 408
BtrI CACGTC 1 cut(s) 512
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 327
Cfr9I CCCGGG 1 cut(s) 15
ClaI ATCGAT 1 cut(s) 408
Csp6I GTAC 4 cut(s) 68, 116, 207, 234
CviAII CATG 1 cut(s) 464
CviJI RGCY 7 cut(s) 11, 65, 219, 351, 372, 452, 519
CviKI_1 RGCY 7 cut(s) 11, 65, 219, 351, 372, 452, 519
CviQI GTAC 4 cut(s) 68, 116, 207, 234
DpnI GATC 3 cut(s) 284, 407, 499
DpnII GATC 3 cut(s) 282, 405, 497
EaeI YGGCCR 2 cut(s) 450, 517
Eam1104I CTCTTC 3 cut(s) 226, 241, 476
EarI CTCTTC 3 cut(s) 226, 241, 476
Eco130I CCWWGG 1 cut(s) 437
Eco24I GRGCYC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 327
Eco72I CACGTG 1 cut(s) 526
Eco88I CYCGRG 1 cut(s) 15
Eco91I GGTNACC 1 cut(s) 19
EcoO65I GGTNACC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 437
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 437
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 1 cut(s) 467
FaiI YATR 9 cut(s) 33, 46, 87, 159, 161, 199, 380, 429, 465
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FaqI GGGAC 1 cut(s) 442
FatI CATG 1 cut(s) 463
FauNDI CATATG 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 438
GluI GCNGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 3 cut(s) 11, 452, 519
HapII CCGG 2 cut(s) 16, 374
Hin1II CATG 1 cut(s) 467
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 1 cut(s) 455
HpaII CCGG 2 cut(s) 16, 374
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 272, 403
Hpy188III TCNNGA 4 cut(s) 37, 298, 367, 507
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 3 cut(s) 141, 309, 470
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 5 cut(s) 209, 423, 511, 525, 536
HpyCH4V TGCA 5 cut(s) 44, 92, 173, 258, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpySE526I ACGT 5 cut(s) 209, 423, 511, 525, 536
Hsp92II CATG 1 cut(s) 467
Kzo9I GATC 3 cut(s) 282, 405, 497
LguI GCTCTTC 2 cut(s) 226, 241
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 7 cut(s) 29, 62, 201, 316, 325, 343, 387
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 1 cut(s) 438
MaeII ACGT 5 cut(s) 209, 423, 511, 525, 536
MaeIII GTNAC 5 cut(s) 19, 466, 485, 521, 532
MalI GATC 3 cut(s) 284, 407, 499
MboI GATC 3 cut(s) 282, 405, 497
MboII GAAGA 4 cut(s) 213, 258, 346, 493
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 3 cut(s) 174, 339, 395
MlyI GAGTC 1 cut(s) 464
MnlI CCTC 5 cut(s) 294, 297, 318, 504, 522
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 2 cut(s) 16, 374
MspR9I CCNGG 4 cut(s) 16, 17, 331, 374
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 82
NciI CCSGG 3 cut(s) 16, 17, 374
NdeI CATATG 1 cut(s) 159
NdeII GATC 3 cut(s) 282, 405, 497
NlaIII CATG 1 cut(s) 467
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 5 cut(s) 19, 466, 485, 521, 532
OliI CACNNNNGTG 1 cut(s) 17
PciSI GCTCTTC 2 cut(s) 226, 241
PcsI WCGNNNNNNNCGW 1 cut(s) 517
Pfl23II CGTACG 1 cut(s) 206
PkrI GCNGC 1 cut(s) 84
Ple19I CGATCG 1 cut(s) 500
PleI GAGTC 1 cut(s) 463
PmaCI CACGTG 1 cut(s) 526
PmlI CACGTG 1 cut(s) 526
PpsI GAGTC 1 cut(s) 463
Ppu21I YACGTR 1 cut(s) 526
Psp6I CCWGG 1 cut(s) 329
PspCI CACGTG 1 cut(s) 526
PspEI GGTNACC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 329
PspLI CGTACG 1 cut(s) 206
PspPI GGNCC 1 cut(s) 327
PstI CTGCAG 1 cut(s) 358
PvuI CGATCG 1 cut(s) 500
RsaI GTAC 4 cut(s) 69, 117, 208, 235
RsaNI GTAC 4 cut(s) 68, 116, 207, 234
RseI CAYNNNNRTG 1 cut(s) 17
SapI GCTCTTC 2 cut(s) 226, 241
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 3 cut(s) 282, 405, 497
Sau96I GGNCC 1 cut(s) 327
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 4 cut(s) 16, 17, 331, 374
SduI GDGCHC 1 cut(s) 374
SetI ASST 8 cut(s) 121, 212, 426, 439, 496, 514, 528, 539
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 327
SmaI CCCGGG 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 3 cut(s) 174, 339, 395
SspI AATATT 1 cut(s) 265
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 4 cut(s) 14, 15, 329, 372
StyI CCWWGG 1 cut(s) 437
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 5 cut(s) 212, 426, 514, 528, 539
TaqI TCGA 5 cut(s) 55, 61, 408, 496, 500
TasI AATT 3 cut(s) 174, 339, 395
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 5 cut(s) 19, 466, 485, 521, 532
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 5 cut(s) 19, 466, 485, 521, 532
TspDTI ATGAA 1 cut(s) 452
TspGWI ACGGA 1 cut(s) 42
TspMI CCCGGG 1 cut(s) 15
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 327
XapI RAATTY 1 cut(s) 395
XmaI CCCGGG 1 cut(s) 15
XmaJI CCTAGG 1 cut(s) 437
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.