pycom17g17300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0029429
Physical Location & Seq
Forward (+)
15088268 .. 15089898
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17300.2

Sequence Viewer

Length: 1161 bp
ATGCATTTTAGACTGGTTGTTCCCAACTGTTGGTCAAATAGTAAAGGTAGTTATAATGCTACTGGGAATTTCAGGACCTCAGTAACAGTCTTGTTTTGTCGAACTTTAGCATCGGCTGGCATTATTAAACTGAATTTCAGATTTGGGTTAATTTTAACACTTGGTTTTATTAAAGAACACATATGTATATATATTCCCTGTTTGTTTGCTGAGCTAAATGTAGAAAATATTAAATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATTTTACTATTCTTCTTCCAAGGGCCAAGTGTTTGTTATATGGCGTCATCAGCTTCTTCAATGGCGCTACCTGTTAGCGCCAGGCGTGGTCACCGCCACCCCCGCACGCCCGACACAACATCGGCATCCACTACTAATGTCTTAGGGTCACACAAGTGCCTCGGTGATTTCTCCATATATACTATTGTACATGATATTGGATTGCCTAATGATGCTTGGTGGTTTCTCCATGTAAGTAGAAGGAAAAGGTGTAAAGCTAATAATTCAGCAAAGAAAAATATCCAGGGACCTTGTCACCAGTTGAAGATGGCGAAGGTCACCCGGGTGACCAACATACGTATCACGATCAGATATGATGTCCGGCATCAGGCTACACCAATGGCGAAGCGGCATAGCACATTGGCCCACGTAATTGGTCACGCAATGCCAGACGAGGTGAGGACAAAGGTGCGCGATTGTTTGTCGATAAGTATCCTAACTTTTTATTTCTTTTCCTTTAAATGCAGACAAACAACAATTTCAATGACATTAATGACGATATGTTGGCATACATCAACAGGCTCTTCGCTAAACAGTACAAGCAGTGGAAGAGCGACATGCACCAATATTTTTAGACATTTGATGATCCACAGGTCGCTTTTAAGGAGGGTTGCCCAAAGGAGTTCAAGGACCGGCAAGAAAATTGGGTGTGGTTTATGTAGTCATTTTCAGGAGCCCGGTTCATTGATTCTTTTATATAGTTTTAGTGTAAAGTCATGTGGTCTTTTTATTTGTGAATTTTTTCAATGGTTTTGTTGTGTGATGAAGCGTGTTTCATCTGTAAATAGGAAAAGCCTTCCGGGTTTCTCATGTTTGTTTTCCTCTTACATAAAAATTGTTCTCAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

387

Amino Acids

44.01

Weight (kDa)

10.16

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029429)

Species Orthologous Gene IDs
pyrus_communis pycom12g11810 pycom17g17300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 30
AccII CGCG 1 cut(s) 723
AciI CCGC 3 cut(s) 364, 373, 658
AclWI GGATC 1 cut(s) 889
AcsI RAATTY 3 cut(s) 67, 133, 1046
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 2 cut(s) 459, 847
AfiI CCNNNNNNNGG 2 cut(s) 30, 637
AgsI TTSAA 5 cut(s) 330, 574, 792, 936, 1055
AjnI CCWGG 2 cut(s) 350, 552
AleI CACNNNNGTG 2 cut(s) 424, 593
AluBI AGCT 3 cut(s) 214, 323, 527
AluI AGCT 3 cut(s) 214, 323, 527
AlwI GGATC 1 cut(s) 889
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 2 cut(s) 293, 672
ApoI RAATTY 3 cut(s) 67, 133, 1046
AseI ATTAAT 1 cut(s) 800
Asp700I GAANNNNTTC 1 cut(s) 1050
AspLEI GCGC 3 cut(s) 337, 350, 723
AspS9I GGNCC 5 cut(s) 75, 293, 557, 673, 939
AsuC2I CCSGG 4 cut(s) 592, 593, 987, 1110
AsuHPI GGTGA 6 cut(s) 353, 446, 557, 580, 607, 718
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 3 cut(s) 75, 557, 939
BaeI ACNNNNGTAYC 2 cut(s) 592, 625
BanII GRGCYC 1 cut(s) 987
BccI CCATC 1 cut(s) 571
BciT130I CCWGG 2 cut(s) 352, 554
BciVI GTATCC 1 cut(s) 752
BcnI CCSGG 4 cut(s) 592, 593, 987, 1110
BfoI RGCGCY 2 cut(s) 338, 351
BfuI GTATCC 1 cut(s) 752
BisI GCNGC 1 cut(s) 659
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 660
Bme1390I CCNGG 6 cut(s) 352, 554, 592, 593, 987, 1110
Bme18I GGWCC 3 cut(s) 75, 557, 939
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 5 cut(s) 75, 293, 557, 673, 939
BmiI GGNNCC 2 cut(s) 558, 984
BmrFI CCNGG 6 cut(s) 352, 554, 592, 593, 987, 1110
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 4 cut(s) 119, 404, 472, 643
BmuI ACTGGG 1 cut(s) 72
Bpu1102I GCTNAGC 1 cut(s) 210
BpuMI CCSGG 4 cut(s) 592, 593, 987, 1110
BsaAI YACGTR 2 cut(s) 608, 679
BsaBI GATNNNNATC 1 cut(s) 740
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 4 cut(s) 289, 430, 553, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 637
Bse118I RCCGGY 1 cut(s) 941
Bse1I ACTGG 3 cut(s) 18, 67, 568
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 740
BseBI CCWGG 2 cut(s) 352, 554
BseDI CCNNGG 4 cut(s) 289, 430, 553, 591
BseGI GGATG 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 740
BseLI CCNNNNNNNGG 2 cut(s) 30, 637
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 2 cut(s) 93, 201
BseNI ACTGG 3 cut(s) 18, 67, 568
Bsh1236I CGCG 1 cut(s) 723
BshFI GGCC 2 cut(s) 295, 674
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 5 cut(s) 592, 631, 942, 987, 1109
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 2 cut(s) 30, 637
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 2 cut(s) 295, 674
BsoBI CYCGRG 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 987
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 2 cut(s) 615, 894
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 3 cut(s) 364, 373, 658
BspANI GGCC 2 cut(s) 295, 674
BspCNI CTCAG 2 cut(s) 92, 202
BspFNI CGCG 1 cut(s) 723
BspLI GGNNCC 2 cut(s) 558, 984
BspPI GGATC 1 cut(s) 889
BspQI GCTCTTC 2 cut(s) 838, 853
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 941
BsrGI TGTACA 1 cut(s) 457
BsrI ACTGG 3 cut(s) 18, 67, 568
BssAI RCCGGY 1 cut(s) 941
BssECI CCNNGG 4 cut(s) 289, 430, 553, 591
BssMI GATC 2 cut(s) 615, 894
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 2 cut(s) 352, 554
Bst4CI ACNGT 3 cut(s) 29, 88, 845
Bst6I CTCTTC 2 cut(s) 838, 853
BstACI GRCGYC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 457
BstBAI YACGTR 2 cut(s) 608, 679
BstC8I GCNNGC 2 cut(s) 118, 377
BstDEI CTNAG 3 cut(s) 79, 210, 412
BstEII GGTNACC 3 cut(s) 359, 586, 595
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 723
BstH2I RGCGCY 2 cut(s) 338, 351
BstHHI GCGC 3 cut(s) 337, 350, 723
BstKTI GATC 2 cut(s) 618, 897
BstMBI GATC 2 cut(s) 615, 894
BstMWI GCNNNNNNNGC 2 cut(s) 320, 372
BstNI CCWGG 2 cut(s) 352, 554
BstNSI RCATGY 1 cut(s) 870
BstPI GGTNACC 3 cut(s) 359, 586, 595
BstSCI CCNGG 6 cut(s) 350, 552, 590, 591, 985, 1108
BstSNI TACGTA 1 cut(s) 608
BstUI CGCG 1 cut(s) 723
BstXI CCANNNNNNTGG 1 cut(s) 683
BsuI GTATCC 1 cut(s) 752
BsuRI GGCC 2 cut(s) 295, 674
BtsCI GGATG 1 cut(s) 395
BtsI GCAGTG 1 cut(s) 859
BtsIMutI CAGTG 1 cut(s) 859
Cac8I GCNNGC 2 cut(s) 118, 377
CfoI GCGC 3 cut(s) 337, 350, 723
Cfr10I RCCGGY 1 cut(s) 941
Cfr13I GGNCC 5 cut(s) 75, 293, 557, 673, 939
Cfr9I CCCGGG 1 cut(s) 591
CseI GACGC 1 cut(s) 303
Csp6I GTAC 2 cut(s) 458, 846
CviAII CATG 5 cut(s) 461, 500, 867, 1026, 1119
CviQI GTAC 2 cut(s) 458, 846
DdeI CTNAG 3 cut(s) 79, 210, 412
DpnI GATC 2 cut(s) 617, 896
DpnII GATC 2 cut(s) 615, 894
DraI TTTAAA 1 cut(s) 769
Eam1104I CTCTTC 2 cut(s) 838, 853
EarI CTCTTC 2 cut(s) 838, 853
Eco105I TACGTA 1 cut(s) 608
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 987
Eco47I GGWCC 3 cut(s) 75, 557, 939
Eco88I CYCGRG 1 cut(s) 591
Eco91I GGTNACC 3 cut(s) 359, 586, 595
EcoO109I RGGNCCY 2 cut(s) 75, 557
EcoO65I GGTNACC 3 cut(s) 359, 586, 595
EcoRII CCWGG 2 cut(s) 350, 552
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 987
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 5 cut(s) 464, 503, 870, 1029, 1122
FaqI GGGAC 1 cut(s) 570
FatI CATG 5 cut(s) 460, 499, 866, 1025, 1118
FauI CCCGC 1 cut(s) 380
FauNDI CATATG 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 659
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 1 cut(s) 987
Fsp4HI GCNGC 1 cut(s) 659
GlaI GCGC 3 cut(s) 336, 349, 722
GluI GCNGC 1 cut(s) 659
HaeII RGCGCY 2 cut(s) 338, 351
HaeIII GGCC 2 cut(s) 295, 674
HapII CCGG 5 cut(s) 592, 631, 942, 987, 1109
HgaI GACGC 1 cut(s) 303
HhaI GCGC 3 cut(s) 337, 350, 723
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 5 cut(s) 464, 503, 870, 1029, 1122
Hin6I GCGC 3 cut(s) 335, 348, 721
HinP1I GCGC 3 cut(s) 335, 348, 721
HinfI GANTC 1 cut(s) 997
HpaII CCGG 5 cut(s) 592, 631, 942, 987, 1109
HphI GGTGA 6 cut(s) 353, 446, 557, 580, 607, 718
Hpy188I TCNGA 2 cut(s) 140, 620
Hpy188III TCNNGA 3 cut(s) 73, 613, 980
HpyAV CCTTC 3 cut(s) 504, 577, 1115
HpyCH4III ACNGT 3 cut(s) 29, 88, 845
HpyCH4IV ACGT 2 cut(s) 607, 678
HpyCH4V TGCA 3 cut(s) 4, 774, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 372
HpyF3I CTNAG 3 cut(s) 79, 210, 412
HpySE526I ACGT 2 cut(s) 607, 678
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 5 cut(s) 464, 503, 870, 1029, 1122
HspAI GCGC 3 cut(s) 335, 348, 721
Kzo9I GATC 2 cut(s) 615, 894
LguI GCTCTTC 2 cut(s) 838, 853
LmnI GCTCC 1 cut(s) 982
LweI GCATC 4 cut(s) 119, 404, 472, 643
MaeII ACGT 2 cut(s) 607, 678
MaeIII GTNAC 7 cut(s) 82, 359, 417, 563, 586, 595, 686
MalI GATC 2 cut(s) 617, 896
MboI GATC 2 cut(s) 615, 894
MboII GAAGA 6 cut(s) 274, 277, 318, 586, 825, 870
MhlI GDGCHC 1 cut(s) 987
MluCI AATT 9 cut(s) 67, 133, 150, 532, 681, 786, 951, 1046, 1143
MnlI CCTC 6 cut(s) 88, 440, 697, 702, 909, 1141
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 1050
MseI TTAA 9 cut(s) 126, 149, 155, 171, 231, 267, 768, 800, 911
MslI CAYNNNNRTG 2 cut(s) 424, 593
MspI CCGG 5 cut(s) 592, 631, 942, 987, 1109
MspR9I CCNGG 6 cut(s) 352, 554, 592, 593, 987, 1110
MvaI CCWGG 2 cut(s) 352, 554
MvnI CGCG 1 cut(s) 723
MwoI GCNNNNNNNGC 2 cut(s) 320, 372
NciI CCSGG 4 cut(s) 592, 593, 987, 1110
NdeI CATATG 1 cut(s) 182
NdeII GATC 2 cut(s) 615, 894
NlaIII CATG 5 cut(s) 464, 503, 870, 1029, 1122
NlaIV GGNNCC 2 cut(s) 558, 984
NmuCI GTSAC 6 cut(s) 359, 417, 563, 586, 595, 686
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 870
OliI CACNNNNGTG 2 cut(s) 424, 593
PciSI GCTCTTC 2 cut(s) 838, 853
PdmI GAANNNNTTC 1 cut(s) 1050
PfeI GAWTC 1 cut(s) 997
PflFI GACNNNGTC 1 cut(s) 561
PflMI CCANNNNNTGG 1 cut(s) 30
PkrI GCNGC 1 cut(s) 660
Ppu21I YACGTR 2 cut(s) 608, 679
PpuMI RGGWCCY 2 cut(s) 75, 557
PshBI ATTAAT 1 cut(s) 800
PsiI TTATAA 1 cut(s) 54
Psp5II RGGWCCY 2 cut(s) 75, 557
Psp6I CCWGG 2 cut(s) 350, 552
PspEI GGTNACC 3 cut(s) 359, 586, 595
PspGI CCWGG 2 cut(s) 350, 552
PspN4I GGNNCC 2 cut(s) 558, 984
PspPI GGNCC 5 cut(s) 75, 293, 557, 673, 939
PspPPI RGGWCCY 2 cut(s) 75, 557
PsyI GACNNNGTC 1 cut(s) 561
RsaI GTAC 2 cut(s) 459, 847
RsaNI GTAC 2 cut(s) 458, 846
RseI CAYNNNNRTG 2 cut(s) 424, 593
SapI GCTCTTC 2 cut(s) 838, 853
SaqAI TTAA 9 cut(s) 126, 149, 155, 171, 231, 267, 768, 800, 911
SatI GCNGC 1 cut(s) 659
Sau3AI GATC 2 cut(s) 615, 894
Sau96I GGNCC 5 cut(s) 75, 293, 557, 673, 939
ScrFI CCNGG 6 cut(s) 352, 554, 592, 593, 987, 1110
SduI GDGCHC 1 cut(s) 987
SfaNI GCATC 4 cut(s) 119, 404, 472, 643
SinI GGWCC 3 cut(s) 75, 557, 939
SmaI CCCGGG 1 cut(s) 593
SmiMI CAYNNNNRTG 2 cut(s) 424, 593
SnaBI TACGTA 1 cut(s) 608
Sse9I AATT 9 cut(s) 67, 133, 150, 532, 681, 786, 951, 1046, 1143
SsiI CCGC 3 cut(s) 364, 373, 658
SspI AATATT 2 cut(s) 229, 877
StyD4I CCNGG 6 cut(s) 350, 552, 590, 591, 985, 1108
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 29, 88, 845
TaiI ACGT 2 cut(s) 610, 681
TaqI TCGA 2 cut(s) 100, 734
TasI AATT 9 cut(s) 67, 133, 150, 532, 681, 786, 951, 1046, 1143
TatI WGTACW 2 cut(s) 457, 845
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 1 cut(s) 997
Tru1I TTAA 9 cut(s) 126, 149, 155, 171, 231, 267, 768, 800, 911
Tru9I TTAA 9 cut(s) 126, 149, 155, 171, 231, 267, 768, 800, 911
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 6 cut(s) 359, 417, 563, 586, 595, 686
Tsp45I GTSAC 6 cut(s) 359, 417, 563, 586, 595, 686
TspDTI ATGAA 3 cut(s) 981, 1074, 1088
TspMI CCCGGG 1 cut(s) 591
TspRI CASTG 1 cut(s) 859
Tth111I GACNNNGTC 1 cut(s) 561
Van91I CCANNNNNTGG 1 cut(s) 30
VpaK11BI GGWCC 3 cut(s) 75, 557, 939
VspI ATTAAT 1 cut(s) 800
XapI RAATTY 3 cut(s) 67, 133, 1046
XceI RCATGY 1 cut(s) 870
XmaI CCCGGG 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 1050
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.