pycom12g13470

SLT1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0026830
Physical Location & Seq
Reverse (-)
15933520 .. 15934500
981 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13470.1

Sequence Viewer

Length: 981 bp
ATGGGCATTCCCGCCAAGGGGAGCGTCCATTTCCGTTTAGTGTCGACAAGAATAGGTTTTGATCGATCTCACAGGATGCAGCGGAAGCATTATCGGGGTCTTTCAAACCCCCAGTGTGTGCATGGGATTGAGCTTGTTCGGACACCTAATTTGATTGCTCTTGATGAAGAAGACCGTAAAAGGTGGATGGAACTGACTGGGAGGGATGTGAACTTCACAATTCCTACAGAAGCGGGCGATTTTAGTTCGTGGAGAAACCTTCCGAATACAGATTTTGAGCTTGAGAGGCCACCAGCTCCAATAAAGAGCGCGCCCAATTCCCACTCAAAGAAACTTCTGAATGGCTCTGGGCTAAATTTGTCTACCCAGCCATCTAACAGCAACAATTCTGATGGAATGGACCTATCTCCTGTCAGCAAGAGGAGGAAGGAGTTTTTCCCCCACGGGAACGATGATGATTGCTACCTGGCTGTTAATCCTCCGTCTGATCGAATCCCAGATACGGAAACCCACCCAAATGAGGTGCAATGGCCAAATCAATTTAGTGGCGTAATGAAGAATGTCTACGGGCCTGTTACAGCTTCCAAAACAATCTATGAGGATGATGCAGGTTATTTAATCATCATCAGCTTACCCTTTGTGGATCTTCAGAGGGTGAAAGTTTCTTGGAGGAATACTCTTACCCAAGGCATCATTAAGGTATCTTGTATAAGCACGTCCCGCTTGCCATACATCAAGAGACATGATCGAACTGTCATGCTTACGGATCCAGCCTCTGAGCATTGTCCCCCAGGAGAGTTTGTCAGAGAGATCCCGCTTGCCACCCGCATTCCTGAAGATGCTAACATAGAAGCTTACTACGACGGGCCAGGTTCTGTGCTTGAGATTATGGTTCCAAAACTCCGCGCCGGGCCAGAAGAACACGAGGTTCGTGTTTGCCTCCGCCCTCACCTCGGGGGCAACGATCTTATGTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

36.69

Weight (kDa)

6.6

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 7 - 85 2.3e-35 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 192 - 300 6.8e-55 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37570
pyrus_communis pycom12g13470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 599
AccI GTMKAC 3 cut(s) 44, 362, 564
AccII CGCG 2 cut(s) 311, 906
AciI CCGC 8 cut(s) 12, 82, 233, 721, 815, 826, 904, 943
AclWI GGATC 4 cut(s) 651, 761, 774, 805
AcoI YGGCCR 1 cut(s) 530
AcsI RAATTY 1 cut(s) 355
AcuI CTGAAG 2 cut(s) 632, 855
AfiI CCNNNNNNNGG 5 cut(s) 17, 18, 502, 520, 953
AgsI TTSAA 1 cut(s) 105
AjiI CACGTC 1 cut(s) 717
AjnI CCWGG 3 cut(s) 465, 790, 868
AluBI AGCT 6 cut(s) 133, 280, 296, 581, 630, 854
AluI AGCT 6 cut(s) 133, 280, 296, 581, 630, 854
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 4 cut(s) 651, 761, 774, 805
AlwNI CAGNNNCTG 2 cut(s) 776, 875
Ama87I CYCGRG 1 cut(s) 953
AoxI GGCC 5 cut(s) 287, 530, 569, 866, 911
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 355
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
AspLEI GCGC 3 cut(s) 311, 313, 908
AspS9I GGNCC 4 cut(s) 400, 569, 866, 911
AsuC2I CCSGG 1 cut(s) 910
AsuHPI GGTGA 2 cut(s) 667, 941
AvaI CYCGRG 1 cut(s) 953
AvaII GGWCC 1 cut(s) 400
BalI TGGCCA 1 cut(s) 532
BamHI GGATCC 1 cut(s) 766
BarI GAAGNNNNNNTAC 2 cut(s) 548, 580
BauI CACGAG 1 cut(s) 923
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 91
BccI CCATC 3 cut(s) 181, 379, 386
BciT130I CCWGG 3 cut(s) 467, 792, 870
BcnI CCSGG 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 733
BfmI CTRYAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 599
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 4 cut(s) 467, 792, 870, 910
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 953
BmgBI CACGTC 1 cut(s) 717
BmgT120I GGNCC 4 cut(s) 400, 569, 866, 911
BmiI GGNNCC 2 cut(s) 768, 894
BmrFI CCNGG 4 cut(s) 467, 792, 870, 910
BmrI ACTGGG 2 cut(s) 106, 207
BmsI GCATC 4 cut(s) 66, 595, 699, 829
BmuI ACTGGG 2 cut(s) 106, 207
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BpuEI CTTGAG 2 cut(s) 302, 902
BpuMI CCSGG 1 cut(s) 910
Bsa29I ATCGAT 1 cut(s) 64
BsaJI CCNNGG 5 cut(s) 15, 442, 685, 790, 952
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 18, 502, 520, 953
Bse1I ACTGG 2 cut(s) 112, 202
Bse3DI GCAATG 1 cut(s) 533
BseBI CCWGG 3 cut(s) 467, 792, 870
BseCI ATCGAT 1 cut(s) 64
BseDI CCNNGG 5 cut(s) 15, 442, 685, 790, 952
BseGI GGATG 4 cut(s) 81, 192, 211, 607
BseLI CCNNNNNNNGG 5 cut(s) 17, 18, 502, 520, 953
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 1 cut(s) 768
BseNI ACTGG 2 cut(s) 112, 202
BsePI GCGCGC 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 366
Bsh1236I CGCG 2 cut(s) 311, 906
BshFI GGCC 5 cut(s) 289, 532, 571, 868, 913
BshVI ATCGAT 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 953
BsiSI CCGG 1 cut(s) 909
BslFI GGGAC 2 cut(s) 703, 771
BslI CCNNNNNNNGG 5 cut(s) 17, 18, 502, 520, 953
BsmAI GTCTC 1 cut(s) 733
BsmFI GGGAC 2 cut(s) 703, 771
BsmI GAATGC 2 cut(s) 6, 828
BsnI GGCC 5 cut(s) 289, 532, 571, 868, 913
BsoBI CYCGRG 1 cut(s) 953
Bsp143I GATC 8 cut(s) 61, 65, 487, 643, 745, 766, 810, 964
BspACI CCGC 8 cut(s) 12, 82, 233, 721, 815, 826, 904, 943
BspANI GGCC 5 cut(s) 289, 532, 571, 868, 913
BspCNI CTCAG 1 cut(s) 769
BspDI ATCGAT 1 cut(s) 64
BspFNI CGCG 2 cut(s) 311, 906
BspLI GGNNCC 2 cut(s) 768, 894
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 4 cut(s) 651, 761, 774, 805
BsrDI GCAATG 1 cut(s) 533
BsrI ACTGG 2 cut(s) 112, 202
BssECI CCNNGG 5 cut(s) 15, 442, 685, 790, 952
BssHII GCGCGC 1 cut(s) 309
BssMI GATC 8 cut(s) 61, 65, 487, 643, 745, 766, 810, 964
BssSI CACGAG 1 cut(s) 923
BssT1I CCWWGG 2 cut(s) 15, 685
Bst2BI CACGAG 1 cut(s) 923
Bst2UI CCWGG 3 cut(s) 467, 792, 870
Bst4CI ACNGT 2 cut(s) 176, 754
BstC8I GCNNGC 4 cut(s) 235, 311, 725, 819
BstDEI CTNAG 1 cut(s) 777
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 4 cut(s) 81, 192, 211, 607
BstFNI CGCG 2 cut(s) 311, 906
BstHHI GCGC 3 cut(s) 311, 313, 908
BstKTI GATC 8 cut(s) 64, 68, 490, 646, 748, 769, 813, 967
BstMAI GTCTC 1 cut(s) 733
BstMBI GATC 8 cut(s) 61, 65, 487, 643, 745, 766, 810, 964
BstMWI GCNNNNNNNGC 3 cut(s) 85, 286, 720
BstNI CCWGG 3 cut(s) 467, 792, 870
BstSCI CCNGG 4 cut(s) 465, 790, 868, 908
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 2 cut(s) 311, 906
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 3 cut(s) 643, 766, 810
BstYI RGATCY 3 cut(s) 643, 766, 810
Bsu15I ATCGAT 1 cut(s) 64
BsuRI GGCC 5 cut(s) 289, 532, 571, 868, 913
BsuTUI ATCGAT 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 442
BtrI CACGTC 1 cut(s) 717
BtsCI GGATG 4 cut(s) 81, 192, 211, 607
BtsIMutI CAGTG 1 cut(s) 119
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 4 cut(s) 235, 311, 725, 819
CaiI CAGNNNCTG 2 cut(s) 776, 875
CfoI GCGC 3 cut(s) 311, 313, 908
Cfr13I GGNCC 4 cut(s) 400, 569, 866, 911
ClaI ATCGAT 1 cut(s) 64
CseI GACGC 1 cut(s) 13
CviAII CATG 3 cut(s) 122, 743, 757
DdeI CTNAG 1 cut(s) 777
DpnI GATC 8 cut(s) 63, 67, 489, 645, 747, 768, 812, 966
DpnII GATC 8 cut(s) 61, 65, 487, 643, 745, 766, 810, 964
EaeI YGGCCR 1 cut(s) 530
EciI GGCGGA 1 cut(s) 932
Eco130I CCWWGG 2 cut(s) 15, 685
Eco47I GGWCC 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 632, 855
Eco88I CYCGRG 1 cut(s) 953
EcoRII CCWGG 3 cut(s) 465, 790, 868
EcoT14I CCWWGG 2 cut(s) 15, 685
ErhI CCWWGG 2 cut(s) 15, 685
FaeI CATG 3 cut(s) 125, 746, 760
FaiI YATR 9 cut(s) 123, 597, 710, 730, 744, 758, 848, 890, 971
FaqI GGGAC 2 cut(s) 703, 771
FatI CATG 3 cut(s) 121, 742, 756
FauI CCCGC 5 cut(s) 19, 226, 728, 822, 833
FblI GTMKAC 3 cut(s) 44, 362, 564
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 4 cut(s) 88, 199, 218, 614
Fsp4HI GCNGC 1 cut(s) 80
GlaI GCGC 3 cut(s) 310, 312, 907
GluI GCNGC 1 cut(s) 80
GsaI CCCAGC 1 cut(s) 370
HaeIII GGCC 5 cut(s) 289, 532, 571, 868, 913
HapII CCGG 1 cut(s) 909
HgaI GACGC 1 cut(s) 13
HhaI GCGC 3 cut(s) 311, 313, 908
Hin1II CATG 3 cut(s) 125, 746, 760
Hin6I GCGC 3 cut(s) 309, 311, 906
HinP1I GCGC 3 cut(s) 309, 311, 906
HincII GTYRAC 2 cut(s) 45, 975
HindII GTYRAC 2 cut(s) 45, 975
HindIII AAGCTT 1 cut(s) 852
HinfI GANTC 1 cut(s) 492
HpaII CCGG 1 cut(s) 909
HphI GGTGA 2 cut(s) 667, 941
Hpy166II GTNNAC 5 cut(s) 45, 211, 363, 565, 975
Hpy188I TCNGA 8 cut(s) 141, 264, 339, 391, 487, 651, 778, 806
Hpy188III TCNNGA 3 cut(s) 161, 736, 833
Hpy8I GTNNAC 5 cut(s) 45, 211, 363, 565, 975
Hpy99I CGWCG 1 cut(s) 866
HpyAV CCTTC 2 cut(s) 269, 421
HpyCH4III ACNGT 2 cut(s) 176, 754
HpyCH4IV ACGT 1 cut(s) 716
HpyCH4V TGCA 4 cut(s) 79, 121, 526, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 286, 720
HpyF3I CTNAG 1 cut(s) 777
HpySE526I ACGT 1 cut(s) 716
Hsp92II CATG 3 cut(s) 125, 746, 760
HspAI GCGC 3 cut(s) 309, 311, 906
Kzo9I GATC 8 cut(s) 61, 65, 487, 643, 745, 766, 810, 964
LmnI GCTCC 2 cut(s) 21, 301
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 4 cut(s) 66, 595, 699, 829
MaeII ACGT 1 cut(s) 716
MaeIII GTNAC 1 cut(s) 574
MalI GATC 8 cut(s) 63, 67, 489, 645, 747, 768, 812, 966
MboI GATC 8 cut(s) 61, 65, 487, 643, 745, 766, 810, 964
MboII GAAGA 6 cut(s) 179, 182, 568, 638, 848, 929
MflI RGATCY 3 cut(s) 643, 766, 810
MlsI TGGCCA 1 cut(s) 532
MluCI AATT 6 cut(s) 148, 219, 316, 355, 385, 539
MluNI TGGCCA 1 cut(s) 532
Mox20I TGGCCA 1 cut(s) 532
MscI TGGCCA 1 cut(s) 532
MseI TTAA 3 cut(s) 474, 617, 696
MslI CAYNNNNRTG 1 cut(s) 516
Msp20I TGGCCA 1 cut(s) 532
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 1 cut(s) 909
MspR9I CCNGG 4 cut(s) 467, 792, 870, 910
Mva1269I GAATGC 2 cut(s) 6, 828
MvaI CCWGG 3 cut(s) 467, 792, 870
MvnI CGCG 2 cut(s) 311, 906
MwoI GCNNNNNNNGC 3 cut(s) 85, 286, 720
NciI CCSGG 1 cut(s) 910
NdeII GATC 8 cut(s) 61, 65, 487, 643, 745, 766, 810, 964
NlaIII CATG 3 cut(s) 125, 746, 760
NlaIV GGNNCC 2 cut(s) 768, 894
PauI GCGCGC 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 960
PctI GAATGC 2 cut(s) 6, 828
PfeI GAWTC 1 cut(s) 492
PkrI GCNGC 1 cut(s) 81
Psp6I CCWGG 3 cut(s) 465, 790, 868
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 3 cut(s) 465, 790, 868
PspN4I GGNNCC 2 cut(s) 768, 894
PspPI GGNCC 4 cut(s) 400, 569, 866, 911
PstNI CAGNNNCTG 2 cut(s) 776, 875
PsuI RGATCY 3 cut(s) 643, 766, 810
PteI GCGCGC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 516
SalI GTCGAC 1 cut(s) 43
SaqAI TTAA 3 cut(s) 474, 617, 696
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 8 cut(s) 61, 65, 487, 643, 745, 766, 810, 964
Sau96I GGNCC 4 cut(s) 400, 569, 866, 911
ScrFI CCNGG 4 cut(s) 467, 792, 870, 910
SfaNI GCATC 4 cut(s) 66, 595, 699, 829
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 2 cut(s) 281, 881
SmoI CTYRAG 2 cut(s) 281, 881
Sse9I AATT 6 cut(s) 148, 219, 316, 355, 385, 539
SsiI CCGC 8 cut(s) 12, 82, 233, 721, 815, 826, 904, 943
StyD4I CCNGG 4 cut(s) 465, 790, 868, 908
StyI CCWWGG 2 cut(s) 15, 685
TaaI ACNGT 2 cut(s) 176, 754
TaiI ACGT 1 cut(s) 719
TaqI TCGA 4 cut(s) 44, 64, 490, 748
TasI AATT 6 cut(s) 148, 219, 316, 355, 385, 539
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 3 cut(s) 474, 617, 696
Tru9I TTAA 3 cut(s) 474, 617, 696
TscAI CASTG 1 cut(s) 119
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 180, 569
TspGWI ACGGA 4 cut(s) 23, 471, 518, 779
TspRI CASTG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmiI GTMKAC 3 cut(s) 44, 362, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.